Hb_006935_040

Information

Type -
Description -
Location Contig6935: 52486-58236
Sequence    

Annotation

kegg
ID rcu:RCOM_0574250
description hypothetical protein
nr
ID XP_012066178.1
description PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L337
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23759 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54511: 56169-58280 , PASA_asmbl_54512: 56149-58274
cDNA
(Sanger)
(ID:Location)		 033_N23.ab1: 56149-57489

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006935_040 0.0 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
2 Hb_000928_250 0.0935337506 - - calcium ion binding protein, putative [Ricinus communis]
3 Hb_001894_160 0.1169438918 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000008_390 0.1184039922 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
5 Hb_015026_020 0.1210590976 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
6 Hb_003106_200 0.1226018115 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
7 Hb_001414_050 0.1244115147 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
8 Hb_011671_110 0.1298191096 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
9 Hb_000120_350 0.133507956 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
10 Hb_000123_140 0.1357288502 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
11 Hb_000032_200 0.1357558307 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
12 Hb_012787_030 0.1400527032 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
13 Hb_029622_030 0.1414409038 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_001250_040 0.144634396 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
15 Hb_002965_080 0.1453634258 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
16 Hb_000300_710 0.1462689421 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
17 Hb_011609_010 0.1466111022 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
18 Hb_001776_200 0.1499332948 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
19 Hb_001863_340 0.1510411499 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
20 Hb_001021_100 0.1520541014 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_006935_040 Hb_006935_040 Hb_000928_250 Hb_000928_250 Hb_006935_040--Hb_000928_250 Hb_001894_160 Hb_001894_160 Hb_006935_040--Hb_001894_160 Hb_000008_390 Hb_000008_390 Hb_006935_040--Hb_000008_390 Hb_015026_020 Hb_015026_020 Hb_006935_040--Hb_015026_020 Hb_003106_200 Hb_003106_200 Hb_006935_040--Hb_003106_200 Hb_001414_050 Hb_001414_050 Hb_006935_040--Hb_001414_050 Hb_000928_250--Hb_003106_200 Hb_000928_250--Hb_015026_020 Hb_000928_250--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_000928_250--Hb_011671_110 Hb_000622_210 Hb_000622_210 Hb_000928_250--Hb_000622_210 Hb_001894_160--Hb_011671_110 Hb_005941_020 Hb_005941_020 Hb_001894_160--Hb_005941_020 Hb_033930_010 Hb_033930_010 Hb_001894_160--Hb_033930_010 Hb_001894_160--Hb_015026_020 Hb_001894_160--Hb_000622_210 Hb_000086_180 Hb_000086_180 Hb_000008_390--Hb_000086_180 Hb_011609_010 Hb_011609_010 Hb_000008_390--Hb_011609_010 Hb_000803_090 Hb_000803_090 Hb_000008_390--Hb_000803_090 Hb_000959_190 Hb_000959_190 Hb_000008_390--Hb_000959_190 Hb_001021_100 Hb_001021_100 Hb_000008_390--Hb_001021_100 Hb_015026_020--Hb_011671_110 Hb_015026_020--Hb_003106_200 Hb_015026_020--Hb_005941_020 Hb_000076_100 Hb_000076_100 Hb_015026_020--Hb_000076_100 Hb_000818_120 Hb_000818_120 Hb_003106_200--Hb_000818_120 Hb_002249_170 Hb_002249_170 Hb_003106_200--Hb_002249_170 Hb_000032_200 Hb_000032_200 Hb_003106_200--Hb_000032_200 Hb_001198_080 Hb_001198_080 Hb_003106_200--Hb_001198_080 Hb_001776_200 Hb_001776_200 Hb_001414_050--Hb_001776_200 Hb_001414_050--Hb_000008_390 Hb_011671_280 Hb_011671_280 Hb_001414_050--Hb_011671_280 Hb_031821_010 Hb_031821_010 Hb_001414_050--Hb_031821_010 Hb_002965_080 Hb_002965_080 Hb_001414_050--Hb_002965_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.98578 21.0935 55.5519 16.2466 8.54439 3.17319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.66932 4.15802 1.42254 3.65805 16.5251

CAGE analysis