Hb_006938_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig6938: 17022-18012
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02990g
description putative MYB transcription factor family protein
nr
ID XP_012089912.1
description PREDICTED: transcription factor MYB3-like [Jatropha curcas]
swissprot
ID Q9SZP1
description Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1
trembl
ID A0A067JT03
description MYB family protein OS=Jatropha curcas GN=JCGZ_02496 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription repressor myb6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54519: 16945-17352 , PASA_asmbl_54520: 17420-17990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006938_010 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
2 Hb_006569_110 0.0521834806 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001331_040 0.0714924784 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
4 Hb_000381_030 0.0749593852 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
5 Hb_007894_260 0.0779415156 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_006949_030 0.0974959024 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_002542_090 0.1068881571 - - Potassium transporter, putative [Ricinus communis]
8 Hb_000010_200 0.1075513082 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_000254_150 0.1080265495 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
10 Hb_004884_200 0.109119895 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
11 Hb_009627_040 0.1095780821 - - Lipase class 3-related protein, putative [Theobroma cacao]
12 Hb_003060_080 0.1164503457 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
13 Hb_002928_220 0.1180201512 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
14 Hb_005010_040 0.120486551 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
15 Hb_029508_030 0.1225912709 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
16 Hb_000920_360 0.1236190756 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
17 Hb_005116_010 0.130744253 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
18 Hb_002391_350 0.1344445573 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
19 Hb_001623_470 0.1398449281 - - ammonium transporter, putative [Ricinus communis]
20 Hb_001856_060 0.141280543 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006938_010 Hb_006938_010 Hb_006569_110 Hb_006569_110 Hb_006938_010--Hb_006569_110 Hb_001331_040 Hb_001331_040 Hb_006938_010--Hb_001331_040 Hb_000381_030 Hb_000381_030 Hb_006938_010--Hb_000381_030 Hb_007894_260 Hb_007894_260 Hb_006938_010--Hb_007894_260 Hb_006949_030 Hb_006949_030 Hb_006938_010--Hb_006949_030 Hb_002542_090 Hb_002542_090 Hb_006938_010--Hb_002542_090 Hb_006569_110--Hb_007894_260 Hb_003060_080 Hb_003060_080 Hb_006569_110--Hb_003060_080 Hb_000254_150 Hb_000254_150 Hb_006569_110--Hb_000254_150 Hb_002928_220 Hb_002928_220 Hb_006569_110--Hb_002928_220 Hb_006970_100 Hb_006970_100 Hb_006569_110--Hb_006970_100 Hb_001331_040--Hb_000381_030 Hb_001331_040--Hb_006949_030 Hb_000010_200 Hb_000010_200 Hb_001331_040--Hb_000010_200 Hb_001013_040 Hb_001013_040 Hb_001331_040--Hb_001013_040 Hb_005010_040 Hb_005010_040 Hb_001331_040--Hb_005010_040 Hb_000381_030--Hb_006949_030 Hb_000381_030--Hb_000010_200 Hb_000381_030--Hb_001013_040 Hb_000381_030--Hb_007894_260 Hb_007894_260--Hb_003060_080 Hb_007894_260--Hb_000010_200 Hb_000920_360 Hb_000920_360 Hb_007894_260--Hb_000920_360 Hb_001621_020 Hb_001621_020 Hb_006949_030--Hb_001621_020 Hb_006949_030--Hb_000010_200 Hb_002686_390 Hb_002686_390 Hb_006949_030--Hb_002686_390 Hb_002542_090--Hb_005010_040 Hb_002542_090--Hb_002928_220 Hb_002542_090--Hb_001331_040 Hb_002542_090--Hb_000010_200 Hb_001856_060 Hb_001856_060 Hb_002542_090--Hb_001856_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.70827 1.65534 1.07873 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 13.0891 2.75112

CAGE analysis