Hb_006938_060

Information

Type -
Description -
Location Contig6938: 49098-49532
Sequence    

Annotation

kegg
ID rcu:RCOM_0336770
description nutrient reservoir, putative
nr
ID XP_002532967.1
description nutrient reservoir, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T3Z8
description Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0336770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006938_060 0.0 - - nutrient reservoir, putative [Ricinus communis]
2 Hb_040718_010 0.0612030537 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
3 Hb_176680_010 0.0934063083 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
4 Hb_001409_080 0.0973356205 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Populus euphratica]
5 Hb_174168_010 0.1024783155 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
6 Hb_000866_060 0.1044649787 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
7 Hb_006267_040 0.1164506556 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
8 Hb_127263_010 0.1181287712 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
9 Hb_000947_010 0.1192962871 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
10 Hb_001369_460 0.1216648945 - - vacuolar invertase [Manihot esculenta]
11 Hb_005050_030 0.1283888926 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
12 Hb_012655_010 0.1292050602 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
13 Hb_000239_050 0.133602239 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
14 Hb_007262_010 0.133933687 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X2 [Jatropha curcas]
15 Hb_003043_130 0.1353529267 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
16 Hb_002391_030 0.1400461632 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
17 Hb_002151_150 0.1407079159 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
18 Hb_005181_190 0.1431185435 - - PREDICTED: uncharacterized protein LOC105643550 [Jatropha curcas]
19 Hb_000300_110 0.1442546049 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
20 Hb_001374_050 0.1448114626 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]

Gene co-expression network

sample Hb_006938_060 Hb_006938_060 Hb_040718_010 Hb_040718_010 Hb_006938_060--Hb_040718_010 Hb_176680_010 Hb_176680_010 Hb_006938_060--Hb_176680_010 Hb_001409_080 Hb_001409_080 Hb_006938_060--Hb_001409_080 Hb_174168_010 Hb_174168_010 Hb_006938_060--Hb_174168_010 Hb_000866_060 Hb_000866_060 Hb_006938_060--Hb_000866_060 Hb_006267_040 Hb_006267_040 Hb_006938_060--Hb_006267_040 Hb_005050_030 Hb_005050_030 Hb_040718_010--Hb_005050_030 Hb_001369_460 Hb_001369_460 Hb_040718_010--Hb_001369_460 Hb_002151_150 Hb_002151_150 Hb_040718_010--Hb_002151_150 Hb_040718_010--Hb_174168_010 Hb_000947_010 Hb_000947_010 Hb_040718_010--Hb_000947_010 Hb_176680_010--Hb_001409_080 Hb_119443_010 Hb_119443_010 Hb_176680_010--Hb_119443_010 Hb_067558_010 Hb_067558_010 Hb_176680_010--Hb_067558_010 Hb_012539_080 Hb_012539_080 Hb_176680_010--Hb_012539_080 Hb_176680_010--Hb_040718_010 Hb_127263_010 Hb_127263_010 Hb_001409_080--Hb_127263_010 Hb_001409_080--Hb_000866_060 Hb_000239_050 Hb_000239_050 Hb_001409_080--Hb_000239_050 Hb_002762_050 Hb_002762_050 Hb_001409_080--Hb_002762_050 Hb_174168_010--Hb_001369_460 Hb_007520_050 Hb_007520_050 Hb_174168_010--Hb_007520_050 Hb_174168_010--Hb_000947_010 Hb_003043_130 Hb_003043_130 Hb_174168_010--Hb_003043_130 Hb_002391_030 Hb_002391_030 Hb_174168_010--Hb_002391_030 Hb_000866_060--Hb_006267_040 Hb_000866_060--Hb_127263_010 Hb_000866_060--Hb_000239_050 Hb_015044_010 Hb_015044_010 Hb_000866_060--Hb_015044_010 Hb_000300_110 Hb_000300_110 Hb_000866_060--Hb_000300_110 Hb_006267_040--Hb_015044_010 Hb_001014_240 Hb_001014_240 Hb_006267_040--Hb_001014_240 Hb_006267_040--Hb_000300_110 Hb_000128_040 Hb_000128_040 Hb_006267_040--Hb_000128_040 Hb_174899_010 Hb_174899_010 Hb_006267_040--Hb_174899_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.293651 0.0980694 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.056581 0.241645

CAGE analysis