Hb_006938_070

Information

Type -
Description -
Location Contig6938: 56920-59328
Sequence    

Annotation

kegg
ID bvg:104893877
description uncharacterized LOC104893877
nr
ID XP_010678308.1
description PREDICTED: uncharacterized protein LOC104893877 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID B9RL41
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0945300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54524: 60325-63386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006938_070 0.0 - - PREDICTED: uncharacterized protein LOC104893877 [Beta vulgaris subsp. vulgaris]
2 Hb_001190_090 0.2467154228 - - PREDICTED: uncharacterized protein LOC105638813 [Jatropha curcas]
3 Hb_000735_150 0.3148608943 - - hypothetical protein JCGZ_15322 [Jatropha curcas]
4 Hb_124518_010 0.3288663609 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
5 Hb_002118_040 0.3316380409 - - PREDICTED: uncharacterized protein LOC104727990 [Camelina sativa]
6 Hb_005357_090 0.3409504946 - - ubiquitin, putative [Ricinus communis]
7 Hb_019654_080 0.3415425401 - - -
8 Hb_001930_020 0.3430533372 - - PREDICTED: pectinesterase QRT1 [Jatropha curcas]
9 Hb_002357_050 0.3595068483 - - -
10 Hb_006120_100 0.3658252773 - - -
11 Hb_103604_010 0.3748198792 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
12 Hb_001902_020 0.3772505209 - - -
13 Hb_010098_070 0.377643771 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005078_030 0.3793391843 - - -
15 Hb_165666_010 0.379550732 - - -
16 Hb_004757_030 0.3801926706 - - -
17 Hb_009467_050 0.3900061776 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
18 Hb_143397_010 0.390950886 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
19 Hb_003752_050 0.3980874384 - - hypothetical protein JCGZ_15078 [Jatropha curcas]
20 Hb_001304_100 0.3982384009 - - -

Gene co-expression network

sample Hb_006938_070 Hb_006938_070 Hb_001190_090 Hb_001190_090 Hb_006938_070--Hb_001190_090 Hb_000735_150 Hb_000735_150 Hb_006938_070--Hb_000735_150 Hb_124518_010 Hb_124518_010 Hb_006938_070--Hb_124518_010 Hb_002118_040 Hb_002118_040 Hb_006938_070--Hb_002118_040 Hb_005357_090 Hb_005357_090 Hb_006938_070--Hb_005357_090 Hb_019654_080 Hb_019654_080 Hb_006938_070--Hb_019654_080 Hb_001190_090--Hb_002118_040 Hb_004757_030 Hb_004757_030 Hb_001190_090--Hb_004757_030 Hb_005078_030 Hb_005078_030 Hb_001190_090--Hb_005078_030 Hb_002357_050 Hb_002357_050 Hb_001190_090--Hb_002357_050 Hb_001318_090 Hb_001318_090 Hb_001190_090--Hb_001318_090 Hb_000735_150--Hb_124518_010 Hb_000735_150--Hb_005357_090 Hb_001930_020 Hb_001930_020 Hb_000735_150--Hb_001930_020 Hb_000735_150--Hb_002357_050 Hb_000735_150--Hb_005078_030 Hb_000735_150--Hb_004757_030 Hb_124518_010--Hb_005357_090 Hb_124518_010--Hb_001930_020 Hb_124518_010--Hb_002357_050 Hb_124518_010--Hb_005078_030 Hb_124518_010--Hb_004757_030 Hb_000042_190 Hb_000042_190 Hb_002118_040--Hb_000042_190 Hb_000733_130 Hb_000733_130 Hb_002118_040--Hb_000733_130 Hb_103604_010 Hb_103604_010 Hb_002118_040--Hb_103604_010 Hb_006586_010 Hb_006586_010 Hb_002118_040--Hb_006586_010 Hb_052983_010 Hb_052983_010 Hb_002118_040--Hb_052983_010 Hb_005357_090--Hb_001930_020 Hb_005357_090--Hb_002357_050 Hb_005357_090--Hb_005078_030 Hb_005357_090--Hb_004757_030 Hb_003752_050 Hb_003752_050 Hb_019654_080--Hb_003752_050 Hb_006061_010 Hb_006061_010 Hb_019654_080--Hb_006061_010 Hb_130788_010 Hb_130788_010 Hb_019654_080--Hb_130788_010 Hb_000392_390 Hb_000392_390 Hb_019654_080--Hb_000392_390 Hb_003540_130 Hb_003540_130 Hb_019654_080--Hb_003540_130 Hb_001993_020 Hb_001993_020 Hb_019654_080--Hb_001993_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163301 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0511981 0.0928382 0 0

CAGE analysis