Hb_006949_030

Information

Type transcription factor
Description TF Family: WRKY
Location Contig6949: 25556-26416
Sequence    

Annotation

kegg
ID rcu:RCOM_0706470
description WRKY transcription factor, putative
nr
ID XP_002516104.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q8VWQ5
description Probable WRKY transcription factor 50 OS=Arabidopsis thaliana GN=WRKY50 PE=2 SV=1
trembl
ID B9RQT5
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0706470 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 50

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006949_030 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_001331_040 0.0536415808 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
3 Hb_000381_030 0.0693619568 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
4 Hb_006938_010 0.0974959024 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
5 Hb_001621_020 0.0982287872 - - -
6 Hb_000010_200 0.0983303798 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_002686_390 0.1002673648 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
8 Hb_009627_040 0.1030084412 - - Lipase class 3-related protein, putative [Theobroma cacao]
9 Hb_004884_200 0.1032973631 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
10 Hb_005010_040 0.1035853808 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
11 Hb_004079_110 0.1072678034 - - PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera]
12 Hb_002391_350 0.1093196818 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
13 Hb_006711_020 0.1121216222 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
14 Hb_000254_040 0.1127064776 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
15 Hb_001660_040 0.1165911973 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
16 Hb_001266_020 0.1225785715 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
17 Hb_001355_110 0.1239125702 - - PREDICTED: mitochondrial chaperone BCS1-like isoform X1 [Jatropha curcas]
18 Hb_001102_270 0.1309450482 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
19 Hb_002542_090 0.1315330441 - - Potassium transporter, putative [Ricinus communis]
20 Hb_008783_020 0.1342886128 - - hypothetical protein JCGZ_21284 [Jatropha curcas]

Gene co-expression network

sample Hb_006949_030 Hb_006949_030 Hb_001331_040 Hb_001331_040 Hb_006949_030--Hb_001331_040 Hb_000381_030 Hb_000381_030 Hb_006949_030--Hb_000381_030 Hb_006938_010 Hb_006938_010 Hb_006949_030--Hb_006938_010 Hb_001621_020 Hb_001621_020 Hb_006949_030--Hb_001621_020 Hb_000010_200 Hb_000010_200 Hb_006949_030--Hb_000010_200 Hb_002686_390 Hb_002686_390 Hb_006949_030--Hb_002686_390 Hb_001331_040--Hb_000381_030 Hb_001331_040--Hb_006938_010 Hb_001331_040--Hb_000010_200 Hb_001013_040 Hb_001013_040 Hb_001331_040--Hb_001013_040 Hb_005010_040 Hb_005010_040 Hb_001331_040--Hb_005010_040 Hb_000381_030--Hb_006938_010 Hb_000381_030--Hb_000010_200 Hb_000381_030--Hb_001013_040 Hb_007894_260 Hb_007894_260 Hb_000381_030--Hb_007894_260 Hb_006569_110 Hb_006569_110 Hb_006938_010--Hb_006569_110 Hb_006938_010--Hb_007894_260 Hb_002542_090 Hb_002542_090 Hb_006938_010--Hb_002542_090 Hb_001355_110 Hb_001355_110 Hb_001621_020--Hb_001355_110 Hb_001102_270 Hb_001102_270 Hb_001621_020--Hb_001102_270 Hb_004079_110 Hb_004079_110 Hb_001621_020--Hb_004079_110 Hb_162286_030 Hb_162286_030 Hb_001621_020--Hb_162286_030 Hb_001266_020 Hb_001266_020 Hb_001621_020--Hb_001266_020 Hb_000010_200--Hb_002686_390 Hb_004884_200 Hb_004884_200 Hb_000010_200--Hb_004884_200 Hb_000010_200--Hb_007894_260 Hb_000254_040 Hb_000254_040 Hb_002686_390--Hb_000254_040 Hb_006711_020 Hb_006711_020 Hb_002686_390--Hb_006711_020 Hb_002686_390--Hb_004884_200 Hb_001514_210 Hb_001514_210 Hb_002686_390--Hb_001514_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.5396 4.01855 2.21006 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 18.4392 2.39913

CAGE analysis