Hb_006949_050

Information

Type -
Description -
Location Contig6949: 32048-34914
Sequence    

Annotation

kegg
ID mdm:103409217
description uncharacterized LOC103409217
nr
ID AFK47583.1
description unknown [Lotus japonicus]
swissprot
ID -
description -
trembl
ID I3T4Z1
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006949_050 0.0 - - unknown [Lotus japonicus]
2 Hb_006949_040 0.0566047 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_000554_020 0.0774180311 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
4 Hb_000457_150 0.0850200053 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
5 Hb_001671_020 0.0876027876 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
6 Hb_000193_290 0.0893697605 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
7 Hb_004324_370 0.0916587001 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Jatropha curcas]
8 Hb_061802_020 0.0926975739 - - zinc finger family protein [Populus trichocarpa]
9 Hb_000567_260 0.1019412911 - - BnaA09g41440D [Brassica napus]
10 Hb_004128_060 0.102277815 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
11 Hb_000787_110 0.1044679596 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
12 Hb_055062_030 0.1053305842 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
13 Hb_000030_150 0.1063680746 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_005147_090 0.1063746073 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
15 Hb_020178_070 0.1083816133 - - Protein Z, putative [Ricinus communis]
16 Hb_001243_050 0.1087845729 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
17 Hb_002399_010 0.1091201908 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000406_220 0.109566867 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
19 Hb_001159_100 0.1106080161 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
20 Hb_002890_280 0.1112707389 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]

Gene co-expression network

sample Hb_006949_050 Hb_006949_050 Hb_006949_040 Hb_006949_040 Hb_006949_050--Hb_006949_040 Hb_000554_020 Hb_000554_020 Hb_006949_050--Hb_000554_020 Hb_000457_150 Hb_000457_150 Hb_006949_050--Hb_000457_150 Hb_001671_020 Hb_001671_020 Hb_006949_050--Hb_001671_020 Hb_000193_290 Hb_000193_290 Hb_006949_050--Hb_000193_290 Hb_004324_370 Hb_004324_370 Hb_006949_050--Hb_004324_370 Hb_006949_040--Hb_000193_290 Hb_061802_020 Hb_061802_020 Hb_006949_040--Hb_061802_020 Hb_006949_040--Hb_000554_020 Hb_000030_150 Hb_000030_150 Hb_006949_040--Hb_000030_150 Hb_006949_040--Hb_001671_020 Hb_000406_220 Hb_000406_220 Hb_000554_020--Hb_000406_220 Hb_006332_020 Hb_006332_020 Hb_000554_020--Hb_006332_020 Hb_000754_060 Hb_000754_060 Hb_000554_020--Hb_000754_060 Hb_000554_020--Hb_001671_020 Hb_028872_140 Hb_028872_140 Hb_000554_020--Hb_028872_140 Hb_000032_290 Hb_000032_290 Hb_000554_020--Hb_000032_290 Hb_005532_060 Hb_005532_060 Hb_000457_150--Hb_005532_060 Hb_178968_110 Hb_178968_110 Hb_000457_150--Hb_178968_110 Hb_000297_200 Hb_000297_200 Hb_000457_150--Hb_000297_200 Hb_055062_030 Hb_055062_030 Hb_000457_150--Hb_055062_030 Hb_000997_400 Hb_000997_400 Hb_000457_150--Hb_000997_400 Hb_000567_260 Hb_000567_260 Hb_000457_150--Hb_000567_260 Hb_001671_020--Hb_000567_260 Hb_007380_070 Hb_007380_070 Hb_001671_020--Hb_007380_070 Hb_001671_020--Hb_055062_030 Hb_002603_100 Hb_002603_100 Hb_001671_020--Hb_002603_100 Hb_189003_080 Hb_189003_080 Hb_001671_020--Hb_189003_080 Hb_001243_050 Hb_001243_050 Hb_001671_020--Hb_001243_050 Hb_008453_090 Hb_008453_090 Hb_000193_290--Hb_008453_090 Hb_000671_150 Hb_000671_150 Hb_000193_290--Hb_000671_150 Hb_000193_290--Hb_055062_030 Hb_003266_130 Hb_003266_130 Hb_000193_290--Hb_003266_130 Hb_016065_010 Hb_016065_010 Hb_000193_290--Hb_016065_010 Hb_004324_370--Hb_000193_290 Hb_004324_370--Hb_055062_030 Hb_004324_370--Hb_000457_150 Hb_004324_370--Hb_000554_020 Hb_002399_010 Hb_002399_010 Hb_004324_370--Hb_002399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4656 13.908 3.40353 3.69303 9.37468 23.128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7703 21.0424 23.5809 6.85302 4.01883

CAGE analysis