Hb_006951_010

Information

Type -
Description -
Location Contig6951: 8392-10063
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012939mg
description hypothetical protein
nr
ID XP_011046691.1
description PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
swissprot
ID P35133
description Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1
trembl
ID M5W8B0
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012939mg PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54555: 8401-10159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006951_010 0.0 - - PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Populus euphratica]
2 Hb_002186_030 0.0886315675 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 isoform X1 [Populus euphratica]
3 Hb_112145_010 0.0944620922 - - kinase, putative [Ricinus communis]
4 Hb_000201_070 0.0969686514 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
5 Hb_004374_170 0.0986699183 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
6 Hb_002804_070 0.0998857087 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
7 Hb_002170_010 0.1067060038 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
8 Hb_128216_010 0.1089880811 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
9 Hb_005643_080 0.110814246 - - hypothetical protein POPTR_0001s12740g [Populus trichocarpa]
10 Hb_010267_030 0.1112197862 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
11 Hb_000172_070 0.1160599873 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
12 Hb_005618_010 0.1180455915 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
13 Hb_002303_050 0.1213455158 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
14 Hb_005946_200 0.1228561785 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
15 Hb_001953_010 0.1251265039 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
16 Hb_007292_050 0.1297996142 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
17 Hb_004474_070 0.1299983277 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
18 Hb_155015_020 0.1346401165 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
19 Hb_002811_320 0.1364458446 - - cation-transporting atpase plant, putative [Ricinus communis]
20 Hb_001221_050 0.1388706459 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]

Gene co-expression network

sample Hb_006951_010 Hb_006951_010 Hb_002186_030 Hb_002186_030 Hb_006951_010--Hb_002186_030 Hb_112145_010 Hb_112145_010 Hb_006951_010--Hb_112145_010 Hb_000201_070 Hb_000201_070 Hb_006951_010--Hb_000201_070 Hb_004374_170 Hb_004374_170 Hb_006951_010--Hb_004374_170 Hb_002804_070 Hb_002804_070 Hb_006951_010--Hb_002804_070 Hb_002170_010 Hb_002170_010 Hb_006951_010--Hb_002170_010 Hb_002186_030--Hb_000201_070 Hb_002186_030--Hb_004374_170 Hb_005946_200 Hb_005946_200 Hb_002186_030--Hb_005946_200 Hb_001115_100 Hb_001115_100 Hb_002186_030--Hb_001115_100 Hb_002186_030--Hb_002804_070 Hb_112145_010--Hb_002170_010 Hb_128216_010 Hb_128216_010 Hb_112145_010--Hb_128216_010 Hb_002303_050 Hb_002303_050 Hb_112145_010--Hb_002303_050 Hb_155015_020 Hb_155015_020 Hb_112145_010--Hb_155015_020 Hb_002811_320 Hb_002811_320 Hb_112145_010--Hb_002811_320 Hb_010267_030 Hb_010267_030 Hb_000201_070--Hb_010267_030 Hb_000201_070--Hb_112145_010 Hb_000201_070--Hb_155015_020 Hb_172240_010 Hb_172240_010 Hb_000201_070--Hb_172240_010 Hb_004374_170--Hb_002804_070 Hb_001953_010 Hb_001953_010 Hb_004374_170--Hb_001953_010 Hb_000120_600 Hb_000120_600 Hb_004374_170--Hb_000120_600 Hb_017549_010 Hb_017549_010 Hb_004374_170--Hb_017549_010 Hb_004374_170--Hb_005946_200 Hb_002804_070--Hb_001953_010 Hb_002804_070--Hb_005946_200 Hb_002804_070--Hb_000120_600 Hb_002804_070--Hb_002303_050 Hb_004474_070 Hb_004474_070 Hb_002804_070--Hb_004474_070 Hb_002170_010--Hb_128216_010 Hb_005048_090 Hb_005048_090 Hb_002170_010--Hb_005048_090 Hb_002170_010--Hb_010267_030 Hb_002534_070 Hb_002534_070 Hb_002170_010--Hb_002534_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.541318 63.0743 25.8253 92.5501 0.936153 1.54841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.155325 0 0 0.322542 18.2993

CAGE analysis