Hb_006951_020

Information

Type -
Description -
Location Contig6951: 11816-16726
Sequence    

Annotation

kegg
ID cam:101507428
description rac-like GTP-binding protein RAC1-like
nr
ID AGL44366.1
description Rop3 [Hevea brasiliensis]
swissprot
ID O04369
description Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1
trembl
ID T1RLR6
description Rop3 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description rac-like gtp-binding protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54556: 11778-16658 , PASA_asmbl_54557: 13154-13482
cDNA
(Sanger)
(ID:Location)		 031_O09.ab1: 11778-12408 , 053_D19.ab1: 11867-12018

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006951_020 0.0 - - Rop3 [Hevea brasiliensis]
2 Hb_000322_100 0.0705980522 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
3 Hb_000755_030 0.0759744129 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
4 Hb_001047_030 0.0760755878 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
5 Hb_002067_120 0.0809333191 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
6 Hb_007477_080 0.0839575703 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003502_080 0.084400574 - - vacuolar protein sorting, putative [Ricinus communis]
8 Hb_005532_050 0.0856706398 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
9 Hb_008695_120 0.087569295 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
10 Hb_002163_030 0.0888337757 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
11 Hb_008864_110 0.0895465358 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
12 Hb_006252_040 0.0906316728 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
13 Hb_004447_060 0.092972361 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
14 Hb_034506_010 0.0930304186 - - PREDICTED: protein OS-9 homolog [Jatropha curcas]
15 Hb_000562_090 0.0933325502 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
16 Hb_011310_210 0.0935404193 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
17 Hb_002982_040 0.0941783437 - - mta/sah nucleosidase, putative [Ricinus communis]
18 Hb_006816_390 0.0943111846 - - protein phosphatase, putative [Ricinus communis]
19 Hb_008643_040 0.095440263 - - PREDICTED: jacalin-related lectin 3-like [Jatropha curcas]
20 Hb_008714_020 0.0958219308 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]

Gene co-expression network

sample Hb_006951_020 Hb_006951_020 Hb_000322_100 Hb_000322_100 Hb_006951_020--Hb_000322_100 Hb_000755_030 Hb_000755_030 Hb_006951_020--Hb_000755_030 Hb_001047_030 Hb_001047_030 Hb_006951_020--Hb_001047_030 Hb_002067_120 Hb_002067_120 Hb_006951_020--Hb_002067_120 Hb_007477_080 Hb_007477_080 Hb_006951_020--Hb_007477_080 Hb_003502_080 Hb_003502_080 Hb_006951_020--Hb_003502_080 Hb_000034_050 Hb_000034_050 Hb_000322_100--Hb_000034_050 Hb_008695_120 Hb_008695_120 Hb_000322_100--Hb_008695_120 Hb_007336_020 Hb_007336_020 Hb_000322_100--Hb_007336_020 Hb_008864_110 Hb_008864_110 Hb_000322_100--Hb_008864_110 Hb_031091_010 Hb_031091_010 Hb_000322_100--Hb_031091_010 Hb_093432_010 Hb_093432_010 Hb_000755_030--Hb_093432_010 Hb_000645_120 Hb_000645_120 Hb_000755_030--Hb_000645_120 Hb_009969_030 Hb_009969_030 Hb_000755_030--Hb_009969_030 Hb_033187_050 Hb_033187_050 Hb_000755_030--Hb_033187_050 Hb_011310_210 Hb_011310_210 Hb_000755_030--Hb_011310_210 Hb_002400_470 Hb_002400_470 Hb_001047_030--Hb_002400_470 Hb_001047_030--Hb_008864_110 Hb_001301_200 Hb_001301_200 Hb_001047_030--Hb_001301_200 Hb_007904_200 Hb_007904_200 Hb_001047_030--Hb_007904_200 Hb_048937_040 Hb_048937_040 Hb_001047_030--Hb_048937_040 Hb_010457_030 Hb_010457_030 Hb_001047_030--Hb_010457_030 Hb_012023_020 Hb_012023_020 Hb_002067_120--Hb_012023_020 Hb_010565_010 Hb_010565_010 Hb_002067_120--Hb_010565_010 Hb_000107_200 Hb_000107_200 Hb_002067_120--Hb_000107_200 Hb_126295_010 Hb_126295_010 Hb_002067_120--Hb_126295_010 Hb_000606_080 Hb_000606_080 Hb_002067_120--Hb_000606_080 Hb_006816_390 Hb_006816_390 Hb_007477_080--Hb_006816_390 Hb_001100_050 Hb_001100_050 Hb_007477_080--Hb_001100_050 Hb_001862_190 Hb_001862_190 Hb_007477_080--Hb_001862_190 Hb_033153_050 Hb_033153_050 Hb_007477_080--Hb_033153_050 Hb_000134_090 Hb_000134_090 Hb_007477_080--Hb_000134_090 Hb_000699_140 Hb_000699_140 Hb_007477_080--Hb_000699_140 Hb_000465_430 Hb_000465_430 Hb_003502_080--Hb_000465_430 Hb_005016_170 Hb_005016_170 Hb_003502_080--Hb_005016_170 Hb_033843_010 Hb_033843_010 Hb_003502_080--Hb_033843_010 Hb_023001_050 Hb_023001_050 Hb_003502_080--Hb_023001_050 Hb_021409_020 Hb_021409_020 Hb_003502_080--Hb_021409_020 Hb_000204_040 Hb_000204_040 Hb_003502_080--Hb_000204_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
158.865 96.679 69.4123 106.465 118.985 225.916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
108.341 78.9028 94.3993 51.0344 45.8697

CAGE analysis