Hb_006951_030

Information

Type -
Description -
Location Contig6951: 27505-33234
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13690g
description POPTRDRAFT_649220; hypothetical protein
nr
ID XP_012081771.1
description PREDICTED: protein MCM10 homolog [Jatropha curcas]
swissprot
ID Q0VBD2
description Protein MCM10 homolog OS=Mus musculus GN=Mcm10 PE=2 SV=1
trembl
ID A0A067KCU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18816 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein mcm10 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54559: 28979-31812 , PASA_asmbl_54560: 31943-32835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006951_030 0.0 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
2 Hb_000935_080 0.1314333898 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_003894_030 0.1469547253 - - plant sec1, putative [Ricinus communis]
4 Hb_000088_240 0.1481197223 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
5 Hb_004155_020 0.1499424368 transcription factor TF Family: MYB myb, putative [Ricinus communis]
6 Hb_000406_030 0.1502081245 - - Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase [Morus notabilis]
7 Hb_003271_040 0.1515131529 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
8 Hb_011174_040 0.1562373214 - - conserved hypothetical protein [Ricinus communis]
9 Hb_013405_070 0.1562488838 - - ferric-chelate reductase, putative [Ricinus communis]
10 Hb_001232_090 0.1577442718 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
11 Hb_006634_100 0.1577818835 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001329_070 0.1622497744 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
13 Hb_004052_100 0.162968364 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
14 Hb_001377_530 0.1637218001 - - NC domain-containing family protein [Populus trichocarpa]
15 Hb_003050_360 0.1708595828 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
16 Hb_011671_340 0.1714832385 - - small GTPase [Hevea brasiliensis]
17 Hb_011828_040 0.1761848962 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
18 Hb_007002_040 0.177314279 transcription factor TF Family: PHD DNA replication regulator dpb11, putative [Ricinus communis]
19 Hb_001155_050 0.1779184356 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
20 Hb_003813_060 0.1781872836 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006951_030 Hb_006951_030 Hb_000935_080 Hb_000935_080 Hb_006951_030--Hb_000935_080 Hb_003894_030 Hb_003894_030 Hb_006951_030--Hb_003894_030 Hb_000088_240 Hb_000088_240 Hb_006951_030--Hb_000088_240 Hb_004155_020 Hb_004155_020 Hb_006951_030--Hb_004155_020 Hb_000406_030 Hb_000406_030 Hb_006951_030--Hb_000406_030 Hb_003271_040 Hb_003271_040 Hb_006951_030--Hb_003271_040 Hb_000935_080--Hb_000088_240 Hb_000941_060 Hb_000941_060 Hb_000935_080--Hb_000941_060 Hb_006634_100 Hb_006634_100 Hb_000935_080--Hb_006634_100 Hb_002942_120 Hb_002942_120 Hb_000935_080--Hb_002942_120 Hb_004163_030 Hb_004163_030 Hb_000935_080--Hb_004163_030 Hb_003740_020 Hb_003740_020 Hb_003894_030--Hb_003740_020 Hb_013405_070 Hb_013405_070 Hb_003894_030--Hb_013405_070 Hb_002374_270 Hb_002374_270 Hb_003894_030--Hb_002374_270 Hb_029253_010 Hb_029253_010 Hb_003894_030--Hb_029253_010 Hb_000000_480 Hb_000000_480 Hb_003894_030--Hb_000000_480 Hb_000527_080 Hb_000527_080 Hb_003894_030--Hb_000527_080 Hb_000120_300 Hb_000120_300 Hb_000088_240--Hb_000120_300 Hb_001123_310 Hb_001123_310 Hb_000088_240--Hb_001123_310 Hb_001377_530 Hb_001377_530 Hb_000088_240--Hb_001377_530 Hb_001117_080 Hb_001117_080 Hb_000088_240--Hb_001117_080 Hb_005527_060 Hb_005527_060 Hb_000088_240--Hb_005527_060 Hb_001232_090 Hb_001232_090 Hb_004155_020--Hb_001232_090 Hb_005901_030 Hb_005901_030 Hb_004155_020--Hb_005901_030 Hb_000526_010 Hb_000526_010 Hb_004155_020--Hb_000526_010 Hb_000260_650 Hb_000260_650 Hb_004155_020--Hb_000260_650 Hb_143813_020 Hb_143813_020 Hb_004155_020--Hb_143813_020 Hb_000563_440 Hb_000563_440 Hb_004155_020--Hb_000563_440 Hb_000310_120 Hb_000310_120 Hb_000406_030--Hb_000310_120 Hb_000406_030--Hb_001232_090 Hb_000406_030--Hb_013405_070 Hb_000331_350 Hb_000331_350 Hb_000406_030--Hb_000331_350 Hb_001587_040 Hb_001587_040 Hb_000406_030--Hb_001587_040 Hb_000331_570 Hb_000331_570 Hb_000406_030--Hb_000331_570 Hb_003271_040--Hb_013405_070 Hb_011671_340 Hb_011671_340 Hb_003271_040--Hb_011671_340 Hb_000800_020 Hb_000800_020 Hb_003271_040--Hb_000800_020 Hb_003835_110 Hb_003835_110 Hb_003271_040--Hb_003835_110 Hb_002205_140 Hb_002205_140 Hb_003271_040--Hb_002205_140 Hb_019654_050 Hb_019654_050 Hb_003271_040--Hb_019654_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0710077 0.236133 1.48532 1.02701 0.0961976 0.0146891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0381726 0.240226 0.336014 0.492736 0.373902

CAGE analysis