Hb_006960_010

Information

Type -
Description -
Location Contig6960: 357-5530
Sequence    

Annotation

kegg
ID rcu:RCOM_0811360
description hypothetical protein
nr
ID XP_002518676.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q54DD7
description Protein unc-50 homolog OS=Dictyostelium discoideum GN=DDB_G0292320 PE=3 SV=1
trembl
ID B9RY92
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0811360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54615: 3492-3898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006960_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_141296_010 0.2257007446 - - -
3 Hb_000928_050 0.2421846601 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
4 Hb_009119_020 0.2500838886 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
5 Hb_004244_010 0.2541067298 - - hypothetical protein JCGZ_06191 [Jatropha curcas]
6 Hb_012490_100 0.2645118719 - - -
7 Hb_138462_010 0.2707382635 - - PREDICTED: SUMO-conjugating enzyme UBC9-A-like isoform X1 [Elaeis guineensis]
8 Hb_001014_130 0.2826031907 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
9 Hb_028912_040 0.2840431686 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
10 Hb_009119_040 0.2917081818 - - PREDICTED: tobamovirus multiplication protein 2A [Jatropha curcas]
11 Hb_003471_020 0.2986417689 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Jatropha curcas]
12 Hb_007456_020 0.2991905049 - - unknown [Lotus japonicus]
13 Hb_000284_100 0.2996701816 - - PREDICTED: transcription factor GTE11 isoform X2 [Populus euphratica]
14 Hb_000181_150 0.3005223069 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
15 Hb_051437_010 0.3008301967 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
16 Hb_002686_380 0.3026493315 - - -
17 Hb_000732_280 0.3033682567 - - hypothetical protein B456_009G173700 [Gossypium raimondii]
18 Hb_127552_060 0.3037685818 transcription factor TF Family: SWI/SNF-BAF60b protein binding protein, putative [Ricinus communis]
19 Hb_000329_560 0.3044700522 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002154_070 0.3051223213 desease resistance Gene Name: AAA_25 hypothetical protein Csa_6G014750 [Cucumis sativus]

Gene co-expression network

sample Hb_006960_010 Hb_006960_010 Hb_141296_010 Hb_141296_010 Hb_006960_010--Hb_141296_010 Hb_000928_050 Hb_000928_050 Hb_006960_010--Hb_000928_050 Hb_009119_020 Hb_009119_020 Hb_006960_010--Hb_009119_020 Hb_004244_010 Hb_004244_010 Hb_006960_010--Hb_004244_010 Hb_012490_100 Hb_012490_100 Hb_006960_010--Hb_012490_100 Hb_138462_010 Hb_138462_010 Hb_006960_010--Hb_138462_010 Hb_060458_010 Hb_060458_010 Hb_141296_010--Hb_060458_010 Hb_000098_300 Hb_000098_300 Hb_141296_010--Hb_000098_300 Hb_141296_010--Hb_138462_010 Hb_060391_010 Hb_060391_010 Hb_141296_010--Hb_060391_010 Hb_007333_040 Hb_007333_040 Hb_141296_010--Hb_007333_040 Hb_001711_050 Hb_001711_050 Hb_000928_050--Hb_001711_050 Hb_071869_010 Hb_071869_010 Hb_000928_050--Hb_071869_010 Hb_002154_070 Hb_002154_070 Hb_000928_050--Hb_002154_070 Hb_010534_050 Hb_010534_050 Hb_000928_050--Hb_010534_050 Hb_000928_050--Hb_141296_010 Hb_009119_020--Hb_007333_040 Hb_019053_010 Hb_019053_010 Hb_009119_020--Hb_019053_010 Hb_115477_010 Hb_115477_010 Hb_009119_020--Hb_115477_010 Hb_106415_010 Hb_106415_010 Hb_009119_020--Hb_106415_010 Hb_051437_010 Hb_051437_010 Hb_009119_020--Hb_051437_010 Hb_033385_010 Hb_033385_010 Hb_009119_020--Hb_033385_010 Hb_004244_010--Hb_002154_070 Hb_003805_060 Hb_003805_060 Hb_004244_010--Hb_003805_060 Hb_002518_110 Hb_002518_110 Hb_004244_010--Hb_002518_110 Hb_000424_150 Hb_000424_150 Hb_004244_010--Hb_000424_150 Hb_028912_040 Hb_028912_040 Hb_004244_010--Hb_028912_040 Hb_032920_100 Hb_032920_100 Hb_004244_010--Hb_032920_100 Hb_000181_150 Hb_000181_150 Hb_012490_100--Hb_000181_150 Hb_002205_060 Hb_002205_060 Hb_012490_100--Hb_002205_060 Hb_130367_010 Hb_130367_010 Hb_012490_100--Hb_130367_010 Hb_000656_090 Hb_000656_090 Hb_012490_100--Hb_000656_090 Hb_012490_100--Hb_009119_020 Hb_002611_030 Hb_002611_030 Hb_138462_010--Hb_002611_030 Hb_017014_010 Hb_017014_010 Hb_138462_010--Hb_017014_010 Hb_138462_010--Hb_060458_010 Hb_138462_010--Hb_001711_050 Hb_007527_070 Hb_007527_070 Hb_138462_010--Hb_007527_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.383815 0 0.276699 1.73594 0.820179 4.52947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.745552 2.19011 1.36474

CAGE analysis