Hb_006960_020

Information

Type -
Description -
Location Contig6960: 7667-8696
Sequence    

Annotation

kegg
ID cit:102617255
description uncharacterized LOC102617255
nr
ID XP_006470496.1
description PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID M5XSK0
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016553mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54616: 8346-9420 , PASA_asmbl_54617: 9599-10531
cDNA
(Sanger)
(ID:Location)		 025_H02.ab1: 8634-9420 , 033_E23.ab1: 8657-9420

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006960_020 0.0 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
2 Hb_000176_170 0.1677129832 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
3 Hb_004102_130 0.1988422112 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000832_200 0.2008984517 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
5 Hb_022749_030 0.2101778469 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
6 Hb_000431_020 0.2187594659 - - hypothetical protein JCGZ_06801 [Jatropha curcas]
7 Hb_008147_030 0.2196018735 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
8 Hb_043959_010 0.2220219383 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
9 Hb_098315_110 0.2240340172 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004712_110 0.2240466142 - - 30S ribosomal protein S10, putative [Ricinus communis]
11 Hb_005867_080 0.2247826627 - - PREDICTED: protein NETWORKED 2A [Jatropha curcas]
12 Hb_005228_120 0.2268462609 - - phospholipase d beta, putative [Ricinus communis]
13 Hb_000987_050 0.2275767358 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
14 Hb_005322_030 0.228292216 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
15 Hb_000173_210 0.2305533094 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
16 Hb_000040_050 0.2319206754 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
17 Hb_053543_010 0.233348324 - - conserved hypothetical protein [Ricinus communis]
18 Hb_099698_010 0.23409284 - - -
19 Hb_011639_050 0.2376598285 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000827_080 0.2383339996 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_006960_020 Hb_006960_020 Hb_000176_170 Hb_000176_170 Hb_006960_020--Hb_000176_170 Hb_004102_130 Hb_004102_130 Hb_006960_020--Hb_004102_130 Hb_000832_200 Hb_000832_200 Hb_006960_020--Hb_000832_200 Hb_022749_030 Hb_022749_030 Hb_006960_020--Hb_022749_030 Hb_000431_020 Hb_000431_020 Hb_006960_020--Hb_000431_020 Hb_008147_030 Hb_008147_030 Hb_006960_020--Hb_008147_030 Hb_000176_170--Hb_004102_130 Hb_098315_110 Hb_098315_110 Hb_000176_170--Hb_098315_110 Hb_000208_290 Hb_000208_290 Hb_000176_170--Hb_000208_290 Hb_011457_110 Hb_011457_110 Hb_000176_170--Hb_011457_110 Hb_000300_530 Hb_000300_530 Hb_000176_170--Hb_000300_530 Hb_006029_010 Hb_006029_010 Hb_000176_170--Hb_006029_010 Hb_172256_010 Hb_172256_010 Hb_004102_130--Hb_172256_010 Hb_000016_180 Hb_000016_180 Hb_004102_130--Hb_000016_180 Hb_003673_020 Hb_003673_020 Hb_004102_130--Hb_003673_020 Hb_000211_080 Hb_000211_080 Hb_004102_130--Hb_000211_080 Hb_004531_090 Hb_004531_090 Hb_004102_130--Hb_004531_090 Hb_000406_040 Hb_000406_040 Hb_000832_200--Hb_000406_040 Hb_007441_070 Hb_007441_070 Hb_000832_200--Hb_007441_070 Hb_000832_200--Hb_098315_110 Hb_000329_390 Hb_000329_390 Hb_000832_200--Hb_000329_390 Hb_000832_200--Hb_006029_010 Hb_002997_100 Hb_002997_100 Hb_000832_200--Hb_002997_100 Hb_003540_140 Hb_003540_140 Hb_022749_030--Hb_003540_140 Hb_004307_040 Hb_004307_040 Hb_022749_030--Hb_004307_040 Hb_000329_540 Hb_000329_540 Hb_022749_030--Hb_000329_540 Hb_000156_030 Hb_000156_030 Hb_022749_030--Hb_000156_030 Hb_000018_160 Hb_000018_160 Hb_022749_030--Hb_000018_160 Hb_022749_030--Hb_008147_030 Hb_000431_020--Hb_000176_170 Hb_003768_040 Hb_003768_040 Hb_000431_020--Hb_003768_040 Hb_000431_020--Hb_000832_200 Hb_000038_030 Hb_000038_030 Hb_000431_020--Hb_000038_030 Hb_099864_010 Hb_099864_010 Hb_000431_020--Hb_099864_010 Hb_000431_020--Hb_000406_040 Hb_000548_010 Hb_000548_010 Hb_008147_030--Hb_000548_010 Hb_001268_230 Hb_001268_230 Hb_008147_030--Hb_001268_230 Hb_141838_010 Hb_141838_010 Hb_008147_030--Hb_141838_010 Hb_003320_030 Hb_003320_030 Hb_008147_030--Hb_003320_030 Hb_031862_170 Hb_031862_170 Hb_008147_030--Hb_031862_170 Hb_004460_020 Hb_004460_020 Hb_008147_030--Hb_004460_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.819124 0.123684 0.339816 0.0217343 1.73589 1.00006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11288 0 0.730891 0.0894469 0.0902118

CAGE analysis