Hb_006960_030

Information

Type transcription factor
Description TF Family: MYB
Location Contig6960: 9726-10550
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09890g
description POPTRDRAFT_557440; hypothetical protein
nr
ID XP_012075857.1
description PREDICTED: transcription factor MYB44-like [Jatropha curcas]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID A0A067LBP5
description MYB family protein OS=Jatropha curcas GN=JCGZ_15461 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54617: 9599-10531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006960_030 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44-like [Jatropha curcas]
2 Hb_000005_320 0.1704985823 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008406_130 0.170879221 - - -
4 Hb_061256_030 0.1860123139 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
5 Hb_003673_020 0.1867170136 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
6 Hb_101020_010 0.1881849516 - - -
7 Hb_000252_090 0.1910894687 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
8 Hb_000544_120 0.1926221262 - - PREDICTED: thymidylate kinase [Jatropha curcas]
9 Hb_035360_010 0.195189905 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
10 Hb_000256_210 0.1959201708 - - PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
11 Hb_063409_020 0.1969466157 - - Calcium-binding protein, putative [Ricinus communis]
12 Hb_003226_170 0.1975093292 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
13 Hb_003580_040 0.2004045636 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
14 Hb_077211_010 0.201618662 - - PREDICTED: lariat debranching enzyme-like [Jatropha curcas]
15 Hb_010189_010 0.2022773523 - - -
16 Hb_003243_020 0.2093397357 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
17 Hb_045502_010 0.2106598632 - - prefoldin subunit 1 [Jatropha curcas]
18 Hb_000038_150 0.2144633771 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
19 Hb_003297_020 0.2148257461 - - unknown [Populus trichocarpa x Populus deltoides]
20 Hb_001907_060 0.2166152827 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_006960_030 Hb_006960_030 Hb_000005_320 Hb_000005_320 Hb_006960_030--Hb_000005_320 Hb_008406_130 Hb_008406_130 Hb_006960_030--Hb_008406_130 Hb_061256_030 Hb_061256_030 Hb_006960_030--Hb_061256_030 Hb_003673_020 Hb_003673_020 Hb_006960_030--Hb_003673_020 Hb_101020_010 Hb_101020_010 Hb_006960_030--Hb_101020_010 Hb_000252_090 Hb_000252_090 Hb_006960_030--Hb_000252_090 Hb_000005_320--Hb_003673_020 Hb_000156_030 Hb_000156_030 Hb_000005_320--Hb_000156_030 Hb_000161_100 Hb_000161_100 Hb_000005_320--Hb_000161_100 Hb_000005_320--Hb_061256_030 Hb_003226_170 Hb_003226_170 Hb_000005_320--Hb_003226_170 Hb_002897_040 Hb_002897_040 Hb_000005_320--Hb_002897_040 Hb_003243_020 Hb_003243_020 Hb_008406_130--Hb_003243_020 Hb_099698_010 Hb_099698_010 Hb_008406_130--Hb_099698_010 Hb_045502_010 Hb_045502_010 Hb_008406_130--Hb_045502_010 Hb_000544_120 Hb_000544_120 Hb_008406_130--Hb_000544_120 Hb_000040_050 Hb_000040_050 Hb_008406_130--Hb_000040_050 Hb_031073_010 Hb_031073_010 Hb_008406_130--Hb_031073_010 Hb_002837_070 Hb_002837_070 Hb_061256_030--Hb_002837_070 Hb_061256_030--Hb_003226_170 Hb_061256_030--Hb_003673_020 Hb_174865_050 Hb_174865_050 Hb_061256_030--Hb_174865_050 Hb_010189_010 Hb_010189_010 Hb_061256_030--Hb_010189_010 Hb_009421_100 Hb_009421_100 Hb_061256_030--Hb_009421_100 Hb_035360_010 Hb_035360_010 Hb_003673_020--Hb_035360_010 Hb_000779_040 Hb_000779_040 Hb_003673_020--Hb_000779_040 Hb_000211_090 Hb_000211_090 Hb_003673_020--Hb_000211_090 Hb_000211_080 Hb_000211_080 Hb_003673_020--Hb_000211_080 Hb_000619_070 Hb_000619_070 Hb_003673_020--Hb_000619_070 Hb_003666_050 Hb_003666_050 Hb_003673_020--Hb_003666_050 Hb_009693_030 Hb_009693_030 Hb_101020_010--Hb_009693_030 Hb_001916_060 Hb_001916_060 Hb_101020_010--Hb_001916_060 Hb_000160_150 Hb_000160_150 Hb_101020_010--Hb_000160_150 Hb_007136_020 Hb_007136_020 Hb_101020_010--Hb_007136_020 Hb_003297_020 Hb_003297_020 Hb_101020_010--Hb_003297_020 Hb_124961_010 Hb_124961_010 Hb_101020_010--Hb_124961_010 Hb_001138_010 Hb_001138_010 Hb_000252_090--Hb_001138_010 Hb_001916_120 Hb_001916_120 Hb_000252_090--Hb_001916_120 Hb_000329_540 Hb_000329_540 Hb_000252_090--Hb_000329_540 Hb_000329_420 Hb_000329_420 Hb_000252_090--Hb_000329_420 Hb_000252_090--Hb_000156_030 Hb_000441_230 Hb_000441_230 Hb_000252_090--Hb_000441_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.3073 2.23322 12.5181 2.73066 32.6285 39.8249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65678 1.63052 1.38637 0.906519 1.64145

CAGE analysis