Hb_006970_030

Information

Type -
Description -
Location Contig6970: 36389-38710
Sequence    

Annotation

kegg
ID rcu:RCOM_1576920
description synaptotagmin, putative
nr
ID XP_002513446.1
description synaptotagmin, putative [Ricinus communis]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID B9RI77
description Synaptotagmin, putative OS=Ricinus communis GN=RCOM_1576920 PE=4 SV=1
Gene Ontology
ID GO:0009506
description calcium-dependent lipid-binding ( domain) plant phosphoribosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54645: 36754-38794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006970_030 0.0 - - synaptotagmin, putative [Ricinus communis]
2 Hb_153258_040 0.0715128436 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
3 Hb_003777_080 0.0779272922 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
4 Hb_000140_460 0.0780087122 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
5 Hb_004970_060 0.0830450561 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
6 Hb_000950_020 0.086297893 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
7 Hb_000049_100 0.0883632603 - - Photosystem II reaction center W protein, putative [Ricinus communis]
8 Hb_001946_120 0.0932049011 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
9 Hb_005348_120 0.0960630673 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
10 Hb_000984_160 0.0960644864 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
11 Hb_012389_010 0.0984355806 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
12 Hb_005694_120 0.0984564209 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
13 Hb_005523_040 0.098801895 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
14 Hb_000618_110 0.1000174387 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
15 Hb_033363_040 0.1006147472 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
16 Hb_011214_130 0.1011750623 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 [Jatropha curcas]
17 Hb_000254_130 0.1018803373 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
18 Hb_000847_030 0.1029056657 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
19 Hb_005210_010 0.1036472186 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
20 Hb_004994_030 0.1047213437 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]

Gene co-expression network

sample Hb_006970_030 Hb_006970_030 Hb_153258_040 Hb_153258_040 Hb_006970_030--Hb_153258_040 Hb_003777_080 Hb_003777_080 Hb_006970_030--Hb_003777_080 Hb_000140_460 Hb_000140_460 Hb_006970_030--Hb_000140_460 Hb_004970_060 Hb_004970_060 Hb_006970_030--Hb_004970_060 Hb_000950_020 Hb_000950_020 Hb_006970_030--Hb_000950_020 Hb_000049_100 Hb_000049_100 Hb_006970_030--Hb_000049_100 Hb_001946_120 Hb_001946_120 Hb_153258_040--Hb_001946_120 Hb_044478_010 Hb_044478_010 Hb_153258_040--Hb_044478_010 Hb_153258_040--Hb_004970_060 Hb_153258_040--Hb_003777_080 Hb_001999_230 Hb_001999_230 Hb_153258_040--Hb_001999_230 Hb_087599_010 Hb_087599_010 Hb_003777_080--Hb_087599_010 Hb_001975_100 Hb_001975_100 Hb_003777_080--Hb_001975_100 Hb_005063_030 Hb_005063_030 Hb_003777_080--Hb_005063_030 Hb_003777_080--Hb_004970_060 Hb_156093_010 Hb_156093_010 Hb_003777_080--Hb_156093_010 Hb_069696_020 Hb_069696_020 Hb_000140_460--Hb_069696_020 Hb_002073_150 Hb_002073_150 Hb_000140_460--Hb_002073_150 Hb_000618_110 Hb_000618_110 Hb_000140_460--Hb_000618_110 Hb_000984_160 Hb_000984_160 Hb_000140_460--Hb_000984_160 Hb_018591_020 Hb_018591_020 Hb_000140_460--Hb_018591_020 Hb_003025_160 Hb_003025_160 Hb_004970_060--Hb_003025_160 Hb_008225_050 Hb_008225_050 Hb_004970_060--Hb_008225_050 Hb_007537_040 Hb_007537_040 Hb_004970_060--Hb_007537_040 Hb_000254_130 Hb_000254_130 Hb_004970_060--Hb_000254_130 Hb_004970_060--Hb_001999_230 Hb_004920_020 Hb_004920_020 Hb_000950_020--Hb_004920_020 Hb_000711_030 Hb_000711_030 Hb_000950_020--Hb_000711_030 Hb_002235_070 Hb_002235_070 Hb_000950_020--Hb_002235_070 Hb_001159_070 Hb_001159_070 Hb_000950_020--Hb_001159_070 Hb_000544_070 Hb_000544_070 Hb_000950_020--Hb_000544_070 Hb_000390_160 Hb_000390_160 Hb_000049_100--Hb_000390_160 Hb_000049_100--Hb_000254_130 Hb_003120_020 Hb_003120_020 Hb_000049_100--Hb_003120_020 Hb_002375_030 Hb_002375_030 Hb_000049_100--Hb_002375_030 Hb_003632_020 Hb_003632_020 Hb_000049_100--Hb_003632_020 Hb_010326_020 Hb_010326_020 Hb_000049_100--Hb_010326_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.122097 0.813828 7.00385 3.83685 0.0315755 0.0368727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0191485 0.090404 0.0573561 0.676492 12.0532

CAGE analysis