Hb_006970_120

Information

Type -
Description -
Location Contig6970: 106104-108980
Sequence    

Annotation

kegg
ID rcu:RCOM_1577090
description hypothetical protein
nr
ID XP_002513453.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RI84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1577090 PE=4 SV=1
Gene Ontology
ID GO:0006457
description dna double-strand break repair rad50 atpase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54652: 106116-108666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006970_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000380_140 0.0680839953 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
3 Hb_000164_110 0.0781760983 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
4 Hb_000147_020 0.0850820253 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
5 Hb_004946_010 0.0873317506 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
6 Hb_002701_060 0.0918989714 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006053_020 0.0939641852 - - CAP [Theobroma cacao]
8 Hb_000675_010 0.1067113279 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
9 Hb_000072_110 0.1077613097 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
10 Hb_004324_320 0.1081921501 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
11 Hb_039435_020 0.1091217083 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
12 Hb_000260_750 0.1100014212 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
13 Hb_067558_010 0.1101724876 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
14 Hb_002122_070 0.1105928716 - - unnamed protein product [Vitis vinifera]
15 Hb_002635_010 0.1106317641 - - homogentisate phytyl transferase [Hevea brasiliensis]
16 Hb_185474_020 0.1107081142 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
17 Hb_010311_020 0.1129573544 - - lrr receptor protein kinase, putative [Ricinus communis]
18 Hb_124579_020 0.1216589137 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
19 Hb_000901_010 0.1219221549 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
20 Hb_170023_010 0.1220384608 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]

Gene co-expression network

sample Hb_006970_120 Hb_006970_120 Hb_000380_140 Hb_000380_140 Hb_006970_120--Hb_000380_140 Hb_000164_110 Hb_000164_110 Hb_006970_120--Hb_000164_110 Hb_000147_020 Hb_000147_020 Hb_006970_120--Hb_000147_020 Hb_004946_010 Hb_004946_010 Hb_006970_120--Hb_004946_010 Hb_002701_060 Hb_002701_060 Hb_006970_120--Hb_002701_060 Hb_006053_020 Hb_006053_020 Hb_006970_120--Hb_006053_020 Hb_002635_010 Hb_002635_010 Hb_000380_140--Hb_002635_010 Hb_010311_020 Hb_010311_020 Hb_000380_140--Hb_010311_020 Hb_000380_140--Hb_004946_010 Hb_185474_020 Hb_185474_020 Hb_000380_140--Hb_185474_020 Hb_124579_020 Hb_124579_020 Hb_000380_140--Hb_124579_020 Hb_000164_110--Hb_000380_140 Hb_000164_110--Hb_004946_010 Hb_002122_070 Hb_002122_070 Hb_000164_110--Hb_002122_070 Hb_000901_010 Hb_000901_010 Hb_000164_110--Hb_000901_010 Hb_000164_110--Hb_000147_020 Hb_000500_360 Hb_000500_360 Hb_000147_020--Hb_000500_360 Hb_004324_320 Hb_004324_320 Hb_000147_020--Hb_004324_320 Hb_000260_750 Hb_000260_750 Hb_000147_020--Hb_000260_750 Hb_000640_330 Hb_000640_330 Hb_000147_020--Hb_000640_330 Hb_000147_020--Hb_000380_140 Hb_004946_010--Hb_000901_010 Hb_000483_430 Hb_000483_430 Hb_004946_010--Hb_000483_430 Hb_000987_020 Hb_000987_020 Hb_004946_010--Hb_000987_020 Hb_000023_130 Hb_000023_130 Hb_004946_010--Hb_000023_130 Hb_002701_060--Hb_006053_020 Hb_002701_170 Hb_002701_170 Hb_002701_060--Hb_002701_170 Hb_000072_110 Hb_000072_110 Hb_002701_060--Hb_000072_110 Hb_000574_010 Hb_000574_010 Hb_002701_060--Hb_000574_010 Hb_039435_020 Hb_039435_020 Hb_002701_060--Hb_039435_020 Hb_006053_020--Hb_039435_020 Hb_006053_020--Hb_002122_070 Hb_067558_010 Hb_067558_010 Hb_006053_020--Hb_067558_010 Hb_006053_020--Hb_000072_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0292643 3.38235 16.504 8.47585 0.0175019 0.0646266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0410394 0.032292 0 9.71132 26.7824

CAGE analysis