Hb_006971_080

Information

Type -
Description -
Location Contig6971: 66711-75217
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006971_080 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_002267_120 0.0192518391 - - hypothetical protein B456_009G136300 [Gossypium raimondii]
3 Hb_008226_110 0.0642738511 - - uncharacterized protein LOC100501343 [Zea mays]
4 Hb_005392_100 0.1284865799 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
5 Hb_147355_030 0.1745091774 - - PREDICTED: putative disease resistance protein RGA3 isoform X5 [Populus euphratica]
6 Hb_082960_020 0.2035001427 - - hypothetical protein B456_012G107300 [Gossypium raimondii]
7 Hb_002942_180 0.2128019388 - - phosphate transporter [Manihot esculenta]
8 Hb_003455_010 0.2152061011 - - hypothetical protein POPTR_0009s14040g [Populus trichocarpa]
9 Hb_113803_010 0.2282434747 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_131652_010 0.2652099779 - - hypothetical protein CICLE_v10010066mg [Citrus clementina]
11 Hb_000565_010 0.2876918713 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
12 Hb_099448_010 0.290125979 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
13 Hb_005597_010 0.2912616578 - - -
14 Hb_004770_060 0.3020614294 - - unnamed protein product, partial [Coffea canephora]
15 Hb_000416_120 0.3021936389 - - Putative LRR receptor-like serine/threonine-protein kinase, partial [Glycine soja]
16 Hb_022819_010 0.3233648067 - - Disease resistance protein RPS5, putative [Ricinus communis]
17 Hb_000248_090 0.3244890143 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
18 Hb_005656_110 0.3244990601 - - cytochrome P450, putative [Ricinus communis]
19 Hb_003938_220 0.3249901148 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_004607_010 0.3260359513 - - -

Gene co-expression network

sample Hb_006971_080 Hb_006971_080 Hb_002267_120 Hb_002267_120 Hb_006971_080--Hb_002267_120 Hb_008226_110 Hb_008226_110 Hb_006971_080--Hb_008226_110 Hb_005392_100 Hb_005392_100 Hb_006971_080--Hb_005392_100 Hb_147355_030 Hb_147355_030 Hb_006971_080--Hb_147355_030 Hb_082960_020 Hb_082960_020 Hb_006971_080--Hb_082960_020 Hb_002942_180 Hb_002942_180 Hb_006971_080--Hb_002942_180 Hb_002267_120--Hb_008226_110 Hb_002267_120--Hb_005392_100 Hb_002267_120--Hb_147355_030 Hb_002267_120--Hb_082960_020 Hb_003455_010 Hb_003455_010 Hb_002267_120--Hb_003455_010 Hb_008226_110--Hb_005392_100 Hb_008226_110--Hb_002942_180 Hb_008226_110--Hb_147355_030 Hb_131652_010 Hb_131652_010 Hb_008226_110--Hb_131652_010 Hb_005392_100--Hb_147355_030 Hb_005392_100--Hb_002942_180 Hb_005392_100--Hb_131652_010 Hb_113803_010 Hb_113803_010 Hb_147355_030--Hb_113803_010 Hb_012355_010 Hb_012355_010 Hb_147355_030--Hb_012355_010 Hb_082960_020--Hb_113803_010 Hb_082960_020--Hb_147355_030 Hb_082960_020--Hb_008226_110 Hb_082960_020--Hb_003455_010 Hb_020532_010 Hb_020532_010 Hb_002942_180--Hb_020532_010 Hb_002942_180--Hb_131652_010 Hb_002942_180--Hb_002267_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00788685 0 0.00465977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0113158 0

CAGE analysis