Hb_006973_060

Information

Type -
Description -
Location Contig6973: 40437-41370
Sequence    

Annotation

kegg
ID tcc:TCM_038475
description hypothetical protein
nr
ID XP_007013928.1
description Uncharacterized protein TCM_038475 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GQV8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_038475 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006973_060 0.0 - - Uncharacterized protein TCM_038475 [Theobroma cacao]
2 Hb_000723_070 0.1318315688 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000302_070 0.1646023959 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
4 Hb_071379_010 0.2185615867 - - PREDICTED: mitogen-activated protein kinase kinase kinase 3-like [Nelumbo nucifera]
5 Hb_000105_110 0.2485954758 - - hypothetical protein, partial [Fervidibacteria bacterium SCGC AAA471-D06]
6 Hb_184109_010 0.2734856602 - - PREDICTED: transcription factor WER-like [Jatropha curcas]
7 Hb_000866_350 0.2752691227 - - -
8 Hb_000413_150 0.2776513451 - - PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
9 Hb_071116_010 0.2797762666 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
10 Hb_168241_010 0.2857621617 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
11 Hb_001246_040 0.2898825708 - - hypothetical protein JCGZ_14673 [Jatropha curcas]
12 Hb_000230_310 0.295814458 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_001138_030 0.2960162458 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
14 Hb_005601_030 0.3074179323 - - organic anion transporter, putative [Ricinus communis]
15 Hb_034589_010 0.3105113852 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
16 Hb_002343_030 0.3116617083 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002627_070 0.3120698489 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011485_080 0.3135683595 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
19 Hb_093385_010 0.3136699857 - - PREDICTED: probable mannitol dehydrogenase [Pyrus x bretschneideri]
20 Hb_011063_040 0.3179165754 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]

Gene co-expression network

sample Hb_006973_060 Hb_006973_060 Hb_000723_070 Hb_000723_070 Hb_006973_060--Hb_000723_070 Hb_000302_070 Hb_000302_070 Hb_006973_060--Hb_000302_070 Hb_071379_010 Hb_071379_010 Hb_006973_060--Hb_071379_010 Hb_000105_110 Hb_000105_110 Hb_006973_060--Hb_000105_110 Hb_184109_010 Hb_184109_010 Hb_006973_060--Hb_184109_010 Hb_000866_350 Hb_000866_350 Hb_006973_060--Hb_000866_350 Hb_000723_070--Hb_000105_110 Hb_000723_070--Hb_000302_070 Hb_000723_070--Hb_184109_010 Hb_000723_070--Hb_000866_350 Hb_168241_010 Hb_168241_010 Hb_000723_070--Hb_168241_010 Hb_000302_070--Hb_000105_110 Hb_005601_030 Hb_005601_030 Hb_000302_070--Hb_005601_030 Hb_093385_010 Hb_093385_010 Hb_000302_070--Hb_093385_010 Hb_002343_030 Hb_002343_030 Hb_000302_070--Hb_002343_030 Hb_000189_060 Hb_000189_060 Hb_071379_010--Hb_000189_060 Hb_000513_080 Hb_000513_080 Hb_071379_010--Hb_000513_080 Hb_059301_010 Hb_059301_010 Hb_071379_010--Hb_059301_010 Hb_071379_010--Hb_000723_070 Hb_045481_010 Hb_045481_010 Hb_071379_010--Hb_045481_010 Hb_000105_110--Hb_002343_030 Hb_000105_110--Hb_093385_010 Hb_000105_110--Hb_005601_030 Hb_007617_040 Hb_007617_040 Hb_000105_110--Hb_007617_040 Hb_184109_010--Hb_168241_010 Hb_184109_010--Hb_000866_350 Hb_007017_050 Hb_007017_050 Hb_184109_010--Hb_007017_050 Hb_011063_040 Hb_011063_040 Hb_184109_010--Hb_011063_040 Hb_001318_160 Hb_001318_160 Hb_184109_010--Hb_001318_160 Hb_004994_270 Hb_004994_270 Hb_184109_010--Hb_004994_270 Hb_000866_350--Hb_168241_010 Hb_000866_350--Hb_007017_050 Hb_000866_350--Hb_001318_160 Hb_000866_350--Hb_011063_040 Hb_000896_130 Hb_000896_130 Hb_000866_350--Hb_000896_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0355177 0 0.164537 0.0954428 0.0666726 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis