Hb_006977_010

Information

Type -
Description -
Location Contig6977: 3780-5745
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08840g
description hypothetical protein
nr
ID CBI33905.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7TTZ0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01030 PE=4 SV=1
Gene Ontology
ID GO:0009507
description tld protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006977_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_006922_120 0.0557017988 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
3 Hb_005295_030 0.0694071837 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
4 Hb_010883_170 0.0774266982 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
5 Hb_007113_060 0.0781804655 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
6 Hb_004162_200 0.079357608 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
7 Hb_005440_040 0.0813433517 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
8 Hb_000816_140 0.0825837844 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
9 Hb_002092_060 0.0863092618 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000531_030 0.087364037 - - conserved hypothetical protein [Ricinus communis]
11 Hb_013749_040 0.0912404913 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PXL1 [Jatropha curcas]
12 Hb_004218_270 0.0919212798 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
13 Hb_004899_230 0.0930719433 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
14 Hb_093084_030 0.0944641766 - - oleosin2 [Plukenetia volubilis]
15 Hb_015175_070 0.0962930534 - - cysteine protease, putative [Ricinus communis]
16 Hb_002311_030 0.0983178181 - - conserved hypothetical protein [Ricinus communis]
17 Hb_166360_010 0.0993502188 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
18 Hb_162450_010 0.100882531 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
19 Hb_007185_050 0.1014515402 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
20 Hb_011618_110 0.1018788674 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]

Gene co-expression network

sample Hb_006977_010 Hb_006977_010 Hb_006922_120 Hb_006922_120 Hb_006977_010--Hb_006922_120 Hb_005295_030 Hb_005295_030 Hb_006977_010--Hb_005295_030 Hb_010883_170 Hb_010883_170 Hb_006977_010--Hb_010883_170 Hb_007113_060 Hb_007113_060 Hb_006977_010--Hb_007113_060 Hb_004162_200 Hb_004162_200 Hb_006977_010--Hb_004162_200 Hb_005440_040 Hb_005440_040 Hb_006977_010--Hb_005440_040 Hb_006922_120--Hb_007113_060 Hb_013749_040 Hb_013749_040 Hb_006922_120--Hb_013749_040 Hb_000816_140 Hb_000816_140 Hb_006922_120--Hb_000816_140 Hb_006922_120--Hb_005440_040 Hb_006922_120--Hb_010883_170 Hb_002092_060 Hb_002092_060 Hb_005295_030--Hb_002092_060 Hb_005295_030--Hb_004162_200 Hb_015175_070 Hb_015175_070 Hb_005295_030--Hb_015175_070 Hb_002309_020 Hb_002309_020 Hb_005295_030--Hb_002309_020 Hb_004899_230 Hb_004899_230 Hb_005295_030--Hb_004899_230 Hb_010883_170--Hb_000816_140 Hb_012653_050 Hb_012653_050 Hb_010883_170--Hb_012653_050 Hb_004202_020 Hb_004202_020 Hb_010883_170--Hb_004202_020 Hb_002221_060 Hb_002221_060 Hb_010883_170--Hb_002221_060 Hb_007113_060--Hb_000816_140 Hb_007113_060--Hb_005440_040 Hb_002311_030 Hb_002311_030 Hb_007113_060--Hb_002311_030 Hb_007113_060--Hb_004162_200 Hb_162450_010 Hb_162450_010 Hb_007113_060--Hb_162450_010 Hb_002067_070 Hb_002067_070 Hb_004162_200--Hb_002067_070 Hb_004162_200--Hb_002311_030 Hb_009151_010 Hb_009151_010 Hb_004162_200--Hb_009151_010 Hb_050898_040 Hb_050898_040 Hb_004162_200--Hb_050898_040 Hb_000227_360 Hb_000227_360 Hb_005440_040--Hb_000227_360 Hb_003858_010 Hb_003858_010 Hb_005440_040--Hb_003858_010 Hb_000531_030 Hb_000531_030 Hb_005440_040--Hb_000531_030 Hb_108090_010 Hb_108090_010 Hb_005440_040--Hb_108090_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.226746 2.46768 7.7874 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.14295

CAGE analysis