Hb_006992_030

Information

Type -
Description -
Location Contig6992: 10366-13709
Sequence    

Annotation

kegg
ID bvg:104898613
description uncharacterized LOC104898613
nr
ID XP_010684010.1
description PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID M1BPI1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006992_030 0.0 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
2 Hb_001355_050 0.0919477854 - - -
3 Hb_003927_020 0.1002682103 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
4 Hb_005765_020 0.1020409107 - - -
5 Hb_005595_030 0.1064621671 - - hypothetical protein EUGRSUZ_A00624 [Eucalyptus grandis]
6 Hb_023547_020 0.145837772 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001880_020 0.1592263685 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
8 Hb_005436_030 0.1725487259 - - PREDICTED: UDP-glycosyltransferase 74E1-like [Jatropha curcas]
9 Hb_000167_070 0.1764702083 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
10 Hb_058095_030 0.1776449902 - - -
11 Hb_001871_030 0.179814331 - - conserved hypothetical protein [Ricinus communis]
12 Hb_043792_030 0.1820683202 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
13 Hb_064106_010 0.1842055273 - - PREDICTED: uncharacterized protein LOC104878249 [Vitis vinifera]
14 Hb_094002_010 0.1873824209 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
15 Hb_001856_280 0.1893939971 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
16 Hb_000028_270 0.1895473816 - - -
17 Hb_000346_050 0.1921977264 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
18 Hb_100332_020 0.1959404156 - - PREDICTED: uncharacterized protein LOC105168695 [Sesamum indicum]
19 Hb_003494_180 0.1997775527 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
20 Hb_089568_010 0.1998197372 - - ferric reductase oxidase [Manihot esculenta]

Gene co-expression network

sample Hb_006992_030 Hb_006992_030 Hb_001355_050 Hb_001355_050 Hb_006992_030--Hb_001355_050 Hb_003927_020 Hb_003927_020 Hb_006992_030--Hb_003927_020 Hb_005765_020 Hb_005765_020 Hb_006992_030--Hb_005765_020 Hb_005595_030 Hb_005595_030 Hb_006992_030--Hb_005595_030 Hb_023547_020 Hb_023547_020 Hb_006992_030--Hb_023547_020 Hb_001880_020 Hb_001880_020 Hb_006992_030--Hb_001880_020 Hb_001355_050--Hb_005595_030 Hb_001355_050--Hb_003927_020 Hb_150516_010 Hb_150516_010 Hb_001355_050--Hb_150516_010 Hb_001355_050--Hb_001880_020 Hb_043792_030 Hb_043792_030 Hb_001355_050--Hb_043792_030 Hb_000167_070 Hb_000167_070 Hb_003927_020--Hb_000167_070 Hb_003927_020--Hb_001880_020 Hb_003927_020--Hb_005595_030 Hb_000346_050 Hb_000346_050 Hb_003927_020--Hb_000346_050 Hb_058095_030 Hb_058095_030 Hb_005765_020--Hb_058095_030 Hb_000028_270 Hb_000028_270 Hb_005765_020--Hb_000028_270 Hb_002585_060 Hb_002585_060 Hb_005765_020--Hb_002585_060 Hb_005765_020--Hb_003927_020 Hb_032299_070 Hb_032299_070 Hb_005765_020--Hb_032299_070 Hb_005595_030--Hb_001880_020 Hb_094002_010 Hb_094002_010 Hb_005595_030--Hb_094002_010 Hb_005595_030--Hb_000167_070 Hb_005436_030 Hb_005436_030 Hb_023547_020--Hb_005436_030 Hb_001538_040 Hb_001538_040 Hb_023547_020--Hb_001538_040 Hb_060822_010 Hb_060822_010 Hb_023547_020--Hb_060822_010 Hb_064106_010 Hb_064106_010 Hb_023547_020--Hb_064106_010 Hb_005831_010 Hb_005831_010 Hb_023547_020--Hb_005831_010 Hb_001880_020--Hb_000167_070 Hb_001856_280 Hb_001856_280 Hb_001880_020--Hb_001856_280 Hb_001880_020--Hb_043792_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0252047 0.0188601 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0481672 0.0964463

CAGE analysis