Hb_006995_010

Information

Type -
Description -
Location Contig6995: 57105-59151
Sequence    

Annotation

kegg
ID vvi:100265718
description 14 kDa zinc-binding protein
nr
ID XP_012088435.1
description PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
swissprot
ID P42856
description 14 kDa zinc-binding protein OS=Zea mays GN=ZBP14 PE=1 SV=1
trembl
ID A0A0D2V7B9
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G000500 PE=4 SV=1
Gene Ontology
ID GO:0005777
description 14 kda zinc-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54709: 57049-87941 , PASA_asmbl_54710: 57343-57649
cDNA
(Sanger)
(ID:Location)		 002_B19.ab1: 57049-87803 , 028_J22.ab1: 57148-87832 , 052_I12.ab1: 57124-87802

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006995_010 0.0 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
2 Hb_003656_150 0.0769452578 - - -
3 Hb_000289_080 0.1094794069 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003029_100 0.1273339436 - - -
5 Hb_012675_080 0.1325496977 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
6 Hb_000086_190 0.1406622358 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
7 Hb_006198_090 0.1448013364 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
8 Hb_008096_020 0.1591373524 - - -
9 Hb_169170_010 0.1606529062 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
10 Hb_007188_030 0.1609490343 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
11 Hb_000204_020 0.1610158642 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
12 Hb_000668_020 0.1649786795 - - -
13 Hb_166480_010 0.1672273791 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
14 Hb_177103_010 0.1673233351 - - PREDICTED: histone H2AX [Elaeis guineensis]
15 Hb_001231_070 0.1699745771 - - -
16 Hb_000084_130 0.1780961182 - - -
17 Hb_000261_360 0.1806688529 - - unknown [Lotus japonicus]
18 Hb_031866_050 0.1807451603 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
19 Hb_075745_010 0.1841478582 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
20 Hb_003030_040 0.1885688436 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_006995_010 Hb_006995_010 Hb_003656_150 Hb_003656_150 Hb_006995_010--Hb_003656_150 Hb_000289_080 Hb_000289_080 Hb_006995_010--Hb_000289_080 Hb_003029_100 Hb_003029_100 Hb_006995_010--Hb_003029_100 Hb_012675_080 Hb_012675_080 Hb_006995_010--Hb_012675_080 Hb_000086_190 Hb_000086_190 Hb_006995_010--Hb_000086_190 Hb_006198_090 Hb_006198_090 Hb_006995_010--Hb_006198_090 Hb_007188_030 Hb_007188_030 Hb_003656_150--Hb_007188_030 Hb_003656_150--Hb_012675_080 Hb_003656_150--Hb_006198_090 Hb_003656_150--Hb_003029_100 Hb_003030_040 Hb_003030_040 Hb_003656_150--Hb_003030_040 Hb_000289_080--Hb_003029_100 Hb_000289_080--Hb_000086_190 Hb_000204_020 Hb_000204_020 Hb_000289_080--Hb_000204_020 Hb_000668_020 Hb_000668_020 Hb_000289_080--Hb_000668_020 Hb_000289_080--Hb_003656_150 Hb_003029_100--Hb_000086_190 Hb_124141_010 Hb_124141_010 Hb_003029_100--Hb_124141_010 Hb_003029_100--Hb_006198_090 Hb_000015_070 Hb_000015_070 Hb_012675_080--Hb_000015_070 Hb_012675_080--Hb_000086_190 Hb_001396_250 Hb_001396_250 Hb_012675_080--Hb_001396_250 Hb_011037_020 Hb_011037_020 Hb_012675_080--Hb_011037_020 Hb_000086_190--Hb_000668_020 Hb_010368_030 Hb_010368_030 Hb_000086_190--Hb_010368_030 Hb_000086_190--Hb_001396_250 Hb_001998_140 Hb_001998_140 Hb_006198_090--Hb_001998_140 Hb_006198_090--Hb_007188_030 Hb_002482_060 Hb_002482_060 Hb_006198_090--Hb_002482_060 Hb_177103_010 Hb_177103_010 Hb_006198_090--Hb_177103_010 Hb_169170_010 Hb_169170_010 Hb_006198_090--Hb_169170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
204.884 73.9825 51.4155 2412.69 208.376 4955.44
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
711.906 658.06 272.097 195.96 60.5459

CAGE analysis