Hb_006995_020

Information

Type -
Description -
Location Contig6995: 64676-66198
Sequence    

Annotation

kegg
ID mtr:MTR_045s0033
description Pentatricopeptide repeat-containing protein
nr
ID KHN39045.1
description hypothetical protein glysoja_017339 [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2S1B7
description Uncharacterized protein OS=Glycine soja GN=glysoja_017339 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54709: 57049-87941
cDNA
(Sanger)
(ID:Location)		 002_B19.ab1: 57049-87803 , 028_J22.ab1: 57148-87832 , 052_I12.ab1: 57124-87802

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006995_020 0.0 - - hypothetical protein glysoja_017339 [Glycine soja]
2 Hb_018591_040 0.0754410414 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
3 Hb_007044_280 0.0896545453 - - PREDICTED: uncharacterized protein LOC105123357 [Populus euphratica]
4 Hb_007659_010 0.2163214449 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
5 Hb_001377_440 0.252774784 - - -
6 Hb_041813_070 0.2682639472 - - -
7 Hb_001969_050 0.2823573984 - - PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
8 Hb_001519_230 0.2884042557 - - PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
9 Hb_002224_050 0.2898392263 - - PREDICTED: uncharacterized protein LOC104764484 isoform X1 [Camelina sativa]
10 Hb_004041_010 0.2992437888 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004947_070 0.2993835918 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
12 Hb_005241_020 0.3068977455 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
13 Hb_001723_050 0.3082774965 - - galactinol synthase-2 [Manihot esculenta]
14 Hb_053582_010 0.3198946737 - - -
15 Hb_000906_050 0.3265550574 - - -
16 Hb_144552_010 0.3293450698 - - CC-NBS-LRR protein, putative [Theobroma cacao]
17 Hb_041476_010 0.3299246288 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
18 Hb_000005_210 0.3497387227 - - -
19 Hb_000041_170 0.3497387227 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
20 Hb_000047_040 0.3497387227 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]

Gene co-expression network

sample Hb_006995_020 Hb_006995_020 Hb_018591_040 Hb_018591_040 Hb_006995_020--Hb_018591_040 Hb_007044_280 Hb_007044_280 Hb_006995_020--Hb_007044_280 Hb_007659_010 Hb_007659_010 Hb_006995_020--Hb_007659_010 Hb_001377_440 Hb_001377_440 Hb_006995_020--Hb_001377_440 Hb_041813_070 Hb_041813_070 Hb_006995_020--Hb_041813_070 Hb_001969_050 Hb_001969_050 Hb_006995_020--Hb_001969_050 Hb_018591_040--Hb_007044_280 Hb_018591_040--Hb_007659_010 Hb_002224_050 Hb_002224_050 Hb_018591_040--Hb_002224_050 Hb_041476_010 Hb_041476_010 Hb_018591_040--Hb_041476_010 Hb_004041_010 Hb_004041_010 Hb_018591_040--Hb_004041_010 Hb_007044_280--Hb_007659_010 Hb_007044_280--Hb_002224_050 Hb_007044_280--Hb_041476_010 Hb_007044_280--Hb_004041_010 Hb_007659_010--Hb_002224_050 Hb_007659_010--Hb_041476_010 Hb_000541_010 Hb_000541_010 Hb_007659_010--Hb_000541_010 Hb_003245_010 Hb_003245_010 Hb_007659_010--Hb_003245_010 Hb_000906_050 Hb_000906_050 Hb_001377_440--Hb_000906_050 Hb_053582_010 Hb_053582_010 Hb_001377_440--Hb_053582_010 Hb_001723_050 Hb_001723_050 Hb_001377_440--Hb_001723_050 Hb_033883_050 Hb_033883_050 Hb_001377_440--Hb_033883_050 Hb_001014_200 Hb_001014_200 Hb_001377_440--Hb_001014_200 Hb_041813_070--Hb_018591_040 Hb_041813_070--Hb_007044_280 Hb_041813_070--Hb_001969_050 Hb_020469_010 Hb_020469_010 Hb_041813_070--Hb_020469_010 Hb_144552_010 Hb_144552_010 Hb_041813_070--Hb_144552_010 Hb_101151_030 Hb_101151_030 Hb_001969_050--Hb_101151_030 Hb_001969_050--Hb_053582_010 Hb_001969_050--Hb_144552_010 Hb_000951_050 Hb_000951_050 Hb_001969_050--Hb_000951_050 Hb_003623_020 Hb_003623_020 Hb_001969_050--Hb_003623_020 Hb_015930_010 Hb_015930_010 Hb_001969_050--Hb_015930_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 7.66887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.21583

CAGE analysis