Hb_006995_040

Information

Type -
Description -
Location Contig6995: 86814-88655
Sequence    

Annotation

kegg
ID pxb:103939303
description 14 kDa zinc-binding protein-like
nr
ID XP_009347648.1
description PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID I1PAU6
description Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
Gene Ontology
ID GO:0005777
description 14 kda zinc-binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54709: 57049-87941
cDNA
(Sanger)
(ID:Location)		 002_B19.ab1: 57049-87803 , 028_J22.ab1: 57148-87832 , 052_I12.ab1: 57124-87802

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006995_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]
2 Hb_182964_010 0.1002780634 - - PREDICTED: uncharacterized protein LOC105642044 isoform X2 [Jatropha curcas]
3 Hb_000215_200 0.114051422 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
4 Hb_000656_340 0.1203277118 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
5 Hb_002284_050 0.1370285693 - - hypothetical protein POPTR_0002s00740g [Populus trichocarpa]
6 Hb_000710_070 0.1394152581 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
7 Hb_014834_140 0.1400638498 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
8 Hb_000994_110 0.1422174047 - - conserved hypothetical protein [Ricinus communis]
9 Hb_080601_020 0.1430002874 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
10 Hb_020035_020 0.1430761302 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
11 Hb_041205_010 0.1439537042 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003994_270 0.1442124196 - - PREDICTED: uncharacterized protein LOC105646152 [Jatropha curcas]
13 Hb_000641_020 0.1453475094 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
14 Hb_000258_030 0.1481935425 - - -
15 Hb_001220_010 0.1514786219 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
16 Hb_042710_010 0.151950236 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
17 Hb_140543_010 0.1526106842 - - -
18 Hb_008221_110 0.1529678505 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
19 Hb_175976_010 0.1561571814 - - -
20 Hb_001754_070 0.15624365 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]

Gene co-expression network

sample Hb_006995_040 Hb_006995_040 Hb_182964_010 Hb_182964_010 Hb_006995_040--Hb_182964_010 Hb_000215_200 Hb_000215_200 Hb_006995_040--Hb_000215_200 Hb_000656_340 Hb_000656_340 Hb_006995_040--Hb_000656_340 Hb_002284_050 Hb_002284_050 Hb_006995_040--Hb_002284_050 Hb_000710_070 Hb_000710_070 Hb_006995_040--Hb_000710_070 Hb_014834_140 Hb_014834_140 Hb_006995_040--Hb_014834_140 Hb_016604_030 Hb_016604_030 Hb_182964_010--Hb_016604_030 Hb_001220_010 Hb_001220_010 Hb_182964_010--Hb_001220_010 Hb_007545_050 Hb_007545_050 Hb_182964_010--Hb_007545_050 Hb_000994_110 Hb_000994_110 Hb_182964_010--Hb_000994_110 Hb_001754_070 Hb_001754_070 Hb_182964_010--Hb_001754_070 Hb_041205_010 Hb_041205_010 Hb_000215_200--Hb_041205_010 Hb_000215_200--Hb_002284_050 Hb_000641_020 Hb_000641_020 Hb_000215_200--Hb_000641_020 Hb_003994_270 Hb_003994_270 Hb_000215_200--Hb_003994_270 Hb_132180_010 Hb_132180_010 Hb_000215_200--Hb_132180_010 Hb_023732_060 Hb_023732_060 Hb_000656_340--Hb_023732_060 Hb_140543_010 Hb_140543_010 Hb_000656_340--Hb_140543_010 Hb_020035_020 Hb_020035_020 Hb_000656_340--Hb_020035_020 Hb_130235_010 Hb_130235_010 Hb_000656_340--Hb_130235_010 Hb_000419_130 Hb_000419_130 Hb_000656_340--Hb_000419_130 Hb_001504_080 Hb_001504_080 Hb_002284_050--Hb_001504_080 Hb_002284_050--Hb_000710_070 Hb_080601_020 Hb_080601_020 Hb_002284_050--Hb_080601_020 Hb_002660_050 Hb_002660_050 Hb_002284_050--Hb_002660_050 Hb_172706_030 Hb_172706_030 Hb_002284_050--Hb_172706_030 Hb_000710_070--Hb_080601_020 Hb_000710_070--Hb_041205_010 Hb_000710_070--Hb_000641_020 Hb_029142_070 Hb_029142_070 Hb_000710_070--Hb_029142_070 Hb_000710_070--Hb_001220_010 Hb_003405_060 Hb_003405_060 Hb_014834_140--Hb_003405_060 Hb_086703_010 Hb_086703_010 Hb_014834_140--Hb_086703_010 Hb_004807_060 Hb_004807_060 Hb_014834_140--Hb_004807_060 Hb_001610_130 Hb_001610_130 Hb_014834_140--Hb_001610_130 Hb_003043_070 Hb_003043_070 Hb_014834_140--Hb_003043_070 Hb_001057_050 Hb_001057_050 Hb_014834_140--Hb_001057_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3344 7.78521 6.11294 79.5372 16.738 100.252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.7731 89.8054 30.8029 15.9498 5.28997

CAGE analysis