Hb_007002_030

Information

Type -
Description -
Location Contig7002: 30276-32173
Sequence    

Annotation

kegg
ID rcu:RCOM_1347460
description hypothetical protein
nr
ID XP_012082873.1
description PREDICTED: transmembrane protein 205 [Jatropha curcas]
swissprot
ID Q6GPW4
description Transmembrane protein 205 OS=Xenopus laevis GN=tmem205 PE=2 SV=1
trembl
ID A0A067K8X7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14010 PE=4 SV=1
Gene Ontology
ID GO:0005783
description transmembrane protein 205

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54809: 30289-32238
cDNA
(Sanger)
(ID:Location)		 018_L02.ab1: 30640-32230 , 032_J12.ab1: 30503-32190 , 036_I07.ab1: 30424-32185 , 039_F13.ab1: 30556-32230

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007002_030 0.0 - - PREDICTED: transmembrane protein 205 [Jatropha curcas]
2 Hb_004899_050 0.0717025276 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
3 Hb_000053_100 0.0829126736 - - PREDICTED: uncharacterized protein LOC105642071 [Jatropha curcas]
4 Hb_002016_100 0.1190938824 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
5 Hb_020400_050 0.1203930949 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
6 Hb_000347_030 0.1218484891 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
7 Hb_000125_190 0.1242384235 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
8 Hb_001833_110 0.1244623366 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002893_080 0.1255175361 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
10 Hb_006277_110 0.1255996798 - - protein with unknown function [Ricinus communis]
11 Hb_003025_040 0.1268566249 - - PREDICTED: elongin-A [Jatropha curcas]
12 Hb_000994_120 0.1279271522 - - unknown [Populus trichocarpa]
13 Hb_001824_010 0.1280110769 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
14 Hb_116894_020 0.1286302113 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
15 Hb_000300_290 0.1315106979 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
16 Hb_089995_010 0.1323955275 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
17 Hb_000123_170 0.1341187305 - - Rab3 [Hevea brasiliensis]
18 Hb_003732_010 0.1341699259 - - hypothetical protein CHLNCDRAFT_58243 [Chlorella variabilis]
19 Hb_006907_130 0.1348938116 - - unnamed protein product [Coffea canephora]
20 Hb_000656_110 0.1357439275 - - nucleolysin tia-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_007002_030 Hb_007002_030 Hb_004899_050 Hb_004899_050 Hb_007002_030--Hb_004899_050 Hb_000053_100 Hb_000053_100 Hb_007002_030--Hb_000053_100 Hb_002016_100 Hb_002016_100 Hb_007002_030--Hb_002016_100 Hb_020400_050 Hb_020400_050 Hb_007002_030--Hb_020400_050 Hb_000347_030 Hb_000347_030 Hb_007002_030--Hb_000347_030 Hb_000125_190 Hb_000125_190 Hb_007002_030--Hb_000125_190 Hb_004899_050--Hb_000053_100 Hb_002596_040 Hb_002596_040 Hb_004899_050--Hb_002596_040 Hb_002893_080 Hb_002893_080 Hb_004899_050--Hb_002893_080 Hb_007317_180 Hb_007317_180 Hb_004899_050--Hb_007317_180 Hb_000994_120 Hb_000994_120 Hb_004899_050--Hb_000994_120 Hb_001833_110 Hb_001833_110 Hb_000053_100--Hb_001833_110 Hb_012053_070 Hb_012053_070 Hb_000053_100--Hb_012053_070 Hb_000053_100--Hb_002016_100 Hb_024185_020 Hb_024185_020 Hb_000053_100--Hb_024185_020 Hb_001369_690 Hb_001369_690 Hb_000053_100--Hb_001369_690 Hb_000025_120 Hb_000025_120 Hb_002016_100--Hb_000025_120 Hb_000668_040 Hb_000668_040 Hb_002016_100--Hb_000668_040 Hb_002016_100--Hb_020400_050 Hb_002016_100--Hb_001833_110 Hb_001105_070 Hb_001105_070 Hb_002016_100--Hb_001105_070 Hb_000496_060 Hb_000496_060 Hb_002016_100--Hb_000496_060 Hb_020400_050--Hb_000125_190 Hb_000123_170 Hb_000123_170 Hb_020400_050--Hb_000123_170 Hb_020400_050--Hb_000025_120 Hb_002061_040 Hb_002061_040 Hb_020400_050--Hb_002061_040 Hb_020400_050--Hb_012053_070 Hb_000329_630 Hb_000329_630 Hb_000347_030--Hb_000329_630 Hb_001439_100 Hb_001439_100 Hb_000347_030--Hb_001439_100 Hb_000958_110 Hb_000958_110 Hb_000347_030--Hb_000958_110 Hb_000015_040 Hb_000015_040 Hb_000347_030--Hb_000015_040 Hb_004837_130 Hb_004837_130 Hb_000347_030--Hb_004837_130 Hb_029584_050 Hb_029584_050 Hb_000347_030--Hb_029584_050 Hb_001519_050 Hb_001519_050 Hb_000125_190--Hb_001519_050 Hb_000635_150 Hb_000635_150 Hb_000125_190--Hb_000635_150 Hb_000125_190--Hb_002061_040 Hb_000125_190--Hb_000123_170 Hb_000125_190--Hb_001833_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
139.883 39.059 44.0143 195.416 101.225 177.45
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
415.049 168.353 175.816 174.085 134.111

CAGE analysis