Hb_007002_050

Information

Type -
Description -
Location Contig7002: 41158-43754
Sequence    

Annotation

kegg
ID pop:POPTR_0002s19840g
description POPTRDRAFT_552515; DNAJ heat shock N-terminal domain-containing family protein
nr
ID XP_012082875.1
description PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14012 PE=4 SV=1
Gene Ontology
ID GO:0005515
description dnaj heat shock n-terminal domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54817: 40971-43840 , PASA_asmbl_54818: 42718-42910
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007002_050 0.0 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
2 Hb_005162_120 0.1508831769 - - ferric reductase oxidase [Manihot esculenta]
3 Hb_002221_010 0.1728793876 - - PREDICTED: adenylyl-sulfate kinase 3-like [Jatropha curcas]
4 Hb_002007_040 0.1788966216 - - unnamed protein product [Coffea canephora]
5 Hb_003638_040 0.1821732296 - - kinesin heavy chain, putative [Ricinus communis]
6 Hb_000028_250 0.1841238713 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
7 Hb_011360_130 0.1894628806 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002942_150 0.1899882691 - - serine carboxypeptidase, putative [Ricinus communis]
9 Hb_000115_190 0.1962792625 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
10 Hb_001501_070 0.1969525112 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
11 Hb_000497_240 0.1983160794 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
12 Hb_001478_020 0.1991046281 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
13 Hb_002232_310 0.199641192 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
14 Hb_044662_050 0.2002726107 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
15 Hb_002078_120 0.2022849554 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
16 Hb_000028_240 0.2095478449 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001755_040 0.2100215083 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
18 Hb_002218_050 0.2101763274 - - SSXT family protein isoform 2, partial [Theobroma cacao]
19 Hb_004410_040 0.2109859302 - - ATP binding protein, putative [Ricinus communis]
20 Hb_114292_010 0.2162928832 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007002_050 Hb_007002_050 Hb_005162_120 Hb_005162_120 Hb_007002_050--Hb_005162_120 Hb_002221_010 Hb_002221_010 Hb_007002_050--Hb_002221_010 Hb_002007_040 Hb_002007_040 Hb_007002_050--Hb_002007_040 Hb_003638_040 Hb_003638_040 Hb_007002_050--Hb_003638_040 Hb_000028_250 Hb_000028_250 Hb_007002_050--Hb_000028_250 Hb_011360_130 Hb_011360_130 Hb_007002_050--Hb_011360_130 Hb_000115_190 Hb_000115_190 Hb_005162_120--Hb_000115_190 Hb_005162_120--Hb_000028_250 Hb_002639_170 Hb_002639_170 Hb_005162_120--Hb_002639_170 Hb_002218_050 Hb_002218_050 Hb_005162_120--Hb_002218_050 Hb_001241_020 Hb_001241_020 Hb_005162_120--Hb_001241_020 Hb_002221_010--Hb_000115_190 Hb_002693_040 Hb_002693_040 Hb_002221_010--Hb_002693_040 Hb_001279_050 Hb_001279_050 Hb_002221_010--Hb_001279_050 Hb_002221_010--Hb_005162_120 Hb_002221_010--Hb_002218_050 Hb_114292_010 Hb_114292_010 Hb_002221_010--Hb_114292_010 Hb_002307_020 Hb_002307_020 Hb_002007_040--Hb_002307_020 Hb_000051_080 Hb_000051_080 Hb_002007_040--Hb_000051_080 Hb_001478_020 Hb_001478_020 Hb_002007_040--Hb_001478_020 Hb_005725_150 Hb_005725_150 Hb_002007_040--Hb_005725_150 Hb_001501_070 Hb_001501_070 Hb_002007_040--Hb_001501_070 Hb_003784_040 Hb_003784_040 Hb_002007_040--Hb_003784_040 Hb_002986_140 Hb_002986_140 Hb_003638_040--Hb_002986_140 Hb_002078_120 Hb_002078_120 Hb_003638_040--Hb_002078_120 Hb_000028_150 Hb_000028_150 Hb_003638_040--Hb_000028_150 Hb_000483_270 Hb_000483_270 Hb_003638_040--Hb_000483_270 Hb_002799_120 Hb_002799_120 Hb_003638_040--Hb_002799_120 Hb_000028_250--Hb_000115_190 Hb_001377_340 Hb_001377_340 Hb_000028_250--Hb_001377_340 Hb_001755_040 Hb_001755_040 Hb_000028_250--Hb_001755_040 Hb_000388_040 Hb_000388_040 Hb_000028_250--Hb_000388_040 Hb_003767_030 Hb_003767_030 Hb_000028_250--Hb_003767_030 Hb_014497_070 Hb_014497_070 Hb_011360_130--Hb_014497_070 Hb_011360_130--Hb_001501_070 Hb_008406_100 Hb_008406_100 Hb_011360_130--Hb_008406_100 Hb_000441_210 Hb_000441_210 Hb_011360_130--Hb_000441_210 Hb_000367_240 Hb_000367_240 Hb_011360_130--Hb_000367_240 Hb_011360_130--Hb_001478_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05592 0.44213 18.621 3.62904 0.106483 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.886789 1.05655 0.489978 0.0317575 1.97367

CAGE analysis