Hb_007007_050

Information

Type -
Description -
Location Contig7007: 26125-27341
Sequence    

Annotation

kegg
ID mdm:103432761
description ubiquitin-related modifier 1 homolog 2
nr
ID XP_008369187.1
description PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
swissprot
ID B3H7G2
description Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana GN=URM1-2 PE=3 SV=1
trembl
ID A0A067KAA2
description Ubiquitin-related modifier 1 homolog OS=Jatropha curcas GN=JCGZ_14475 PE=3 SV=1
Gene Ontology
ID GO:0005737
description ubiquitin-related modifier 1 homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54828: 26189-26968 , PASA_asmbl_54829: 26185-26968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007007_050 0.0 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
2 Hb_002292_010 0.0448973324 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
3 Hb_019962_030 0.0642588943 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
4 Hb_002687_140 0.0783901748 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
5 Hb_000808_250 0.0786660138 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
6 Hb_002784_050 0.08232556 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
7 Hb_000359_330 0.0855655 - - conserved hypothetical protein [Ricinus communis]
8 Hb_022250_030 0.0870707442 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003467_010 0.087667053 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
10 Hb_001348_070 0.0877042551 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_003687_230 0.088873334 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
12 Hb_001898_230 0.0894889635 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
13 Hb_004450_060 0.0894909857 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
14 Hb_001427_050 0.089628496 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
15 Hb_001504_150 0.0897363164 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
16 Hb_007164_020 0.0915283527 - - hypothetical protein glysoja_025872 [Glycine soja]
17 Hb_010968_010 0.0915915592 - - Golgi snare 12 isoform 1 [Theobroma cacao]
18 Hb_106552_050 0.0923527877 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
19 Hb_003849_060 0.092829298 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
20 Hb_004363_010 0.0958549347 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_007007_050 Hb_007007_050 Hb_002292_010 Hb_002292_010 Hb_007007_050--Hb_002292_010 Hb_019962_030 Hb_019962_030 Hb_007007_050--Hb_019962_030 Hb_002687_140 Hb_002687_140 Hb_007007_050--Hb_002687_140 Hb_000808_250 Hb_000808_250 Hb_007007_050--Hb_000808_250 Hb_002784_050 Hb_002784_050 Hb_007007_050--Hb_002784_050 Hb_000359_330 Hb_000359_330 Hb_007007_050--Hb_000359_330 Hb_004363_010 Hb_004363_010 Hb_002292_010--Hb_004363_010 Hb_141532_010 Hb_141532_010 Hb_002292_010--Hb_141532_010 Hb_001135_020 Hb_001135_020 Hb_002292_010--Hb_001135_020 Hb_002639_150 Hb_002639_150 Hb_002292_010--Hb_002639_150 Hb_003687_230 Hb_003687_230 Hb_002292_010--Hb_003687_230 Hb_000666_110 Hb_000666_110 Hb_019962_030--Hb_000666_110 Hb_005535_050 Hb_005535_050 Hb_019962_030--Hb_005535_050 Hb_004722_060 Hb_004722_060 Hb_019962_030--Hb_004722_060 Hb_001898_230 Hb_001898_230 Hb_019962_030--Hb_001898_230 Hb_001504_150 Hb_001504_150 Hb_019962_030--Hb_001504_150 Hb_001348_070 Hb_001348_070 Hb_002687_140--Hb_001348_070 Hb_003752_080 Hb_003752_080 Hb_002687_140--Hb_003752_080 Hb_002687_140--Hb_000808_250 Hb_003849_060 Hb_003849_060 Hb_002687_140--Hb_003849_060 Hb_001352_090 Hb_001352_090 Hb_002687_140--Hb_001352_090 Hb_006623_020 Hb_006623_020 Hb_000808_250--Hb_006623_020 Hb_000808_250--Hb_003849_060 Hb_021422_010 Hb_021422_010 Hb_000808_250--Hb_021422_010 Hb_000808_250--Hb_000359_330 Hb_178968_100 Hb_178968_100 Hb_000808_250--Hb_178968_100 Hb_106552_050 Hb_106552_050 Hb_000808_250--Hb_106552_050 Hb_022250_030 Hb_022250_030 Hb_002784_050--Hb_022250_030 Hb_002685_140 Hb_002685_140 Hb_002784_050--Hb_002685_140 Hb_000676_050 Hb_000676_050 Hb_002784_050--Hb_000676_050 Hb_001635_170 Hb_001635_170 Hb_002784_050--Hb_001635_170 Hb_002784_050--Hb_019962_030 Hb_000327_120 Hb_000327_120 Hb_002784_050--Hb_000327_120 Hb_011848_010 Hb_011848_010 Hb_000359_330--Hb_011848_010 Hb_003091_010 Hb_003091_010 Hb_000359_330--Hb_003091_010 Hb_000394_190 Hb_000394_190 Hb_000359_330--Hb_000394_190 Hb_000359_330--Hb_006623_020 Hb_004450_060 Hb_004450_060 Hb_000359_330--Hb_004450_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.9368 23.3644 26.17 13.4634 45.0421 35.2008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1276 40.0531 15.8171 9.81602 8.48058

CAGE analysis