Hb_007007_060

Information

Type -
Description -
Location Contig7007: 28225-30897
Sequence    

Annotation

kegg
ID pop:POPTR_0002s15370g
description POPTRDRAFT_816572; hypothetical protein
nr
ID XP_012080901.1
description PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
swissprot
ID Q8S8S1
description Peroxisome biogenesis protein 16 OS=Arabidopsis thaliana GN=PEX16 PE=1 SV=1
trembl
ID A0A067KFB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15253 PE=4 SV=1
Gene Ontology
ID GO:0006633
description peroxisome biogenesis protein 16-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007007_060 0.0 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
2 Hb_000160_210 0.0587121109 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008695_020 0.062740752 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
4 Hb_000260_100 0.0655537201 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006960_050 0.0680058392 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
6 Hb_004055_150 0.0705515007 - - conserved hypothetical protein [Ricinus communis]
7 Hb_033720_010 0.0712642675 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
8 Hb_005993_050 0.0720119987 - - Protein AFR, putative [Ricinus communis]
9 Hb_001001_080 0.0721731489 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
10 Hb_003994_200 0.0730254856 - - PREDICTED: uncharacterized protein LOC105646142 [Jatropha curcas]
11 Hb_000649_070 0.0737526562 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
12 Hb_000009_090 0.0739268125 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
13 Hb_023386_020 0.0750084777 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
14 Hb_004097_070 0.0755127731 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
15 Hb_000205_190 0.075930058 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_000794_050 0.0762198862 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
17 Hb_007904_120 0.0765393722 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
18 Hb_079526_030 0.0771822283 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
19 Hb_002684_040 0.078186644 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
20 Hb_001377_320 0.0782928645 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]

Gene co-expression network

sample Hb_007007_060 Hb_007007_060 Hb_000160_210 Hb_000160_210 Hb_007007_060--Hb_000160_210 Hb_008695_020 Hb_008695_020 Hb_007007_060--Hb_008695_020 Hb_000260_100 Hb_000260_100 Hb_007007_060--Hb_000260_100 Hb_006960_050 Hb_006960_050 Hb_007007_060--Hb_006960_050 Hb_004055_150 Hb_004055_150 Hb_007007_060--Hb_004055_150 Hb_033720_010 Hb_033720_010 Hb_007007_060--Hb_033720_010 Hb_003794_010 Hb_003794_010 Hb_000160_210--Hb_003794_010 Hb_004100_080 Hb_004100_080 Hb_000160_210--Hb_004100_080 Hb_023386_020 Hb_023386_020 Hb_000160_210--Hb_023386_020 Hb_000009_090 Hb_000009_090 Hb_000160_210--Hb_000009_090 Hb_079526_030 Hb_079526_030 Hb_000160_210--Hb_079526_030 Hb_009646_030 Hb_009646_030 Hb_008695_020--Hb_009646_030 Hb_000107_400 Hb_000107_400 Hb_008695_020--Hb_000107_400 Hb_005993_050 Hb_005993_050 Hb_008695_020--Hb_005993_050 Hb_007904_120 Hb_007904_120 Hb_008695_020--Hb_007904_120 Hb_008695_020--Hb_004055_150 Hb_005288_150 Hb_005288_150 Hb_000260_100--Hb_005288_150 Hb_002997_080 Hb_002997_080 Hb_000260_100--Hb_002997_080 Hb_000236_240 Hb_000236_240 Hb_000260_100--Hb_000236_240 Hb_001329_130 Hb_001329_130 Hb_000260_100--Hb_001329_130 Hb_000230_560 Hb_000230_560 Hb_000260_100--Hb_000230_560 Hb_000649_070 Hb_000649_070 Hb_006960_050--Hb_000649_070 Hb_006960_050--Hb_004055_150 Hb_004785_100 Hb_004785_100 Hb_006960_050--Hb_004785_100 Hb_006620_020 Hb_006620_020 Hb_006960_050--Hb_006620_020 Hb_020367_050 Hb_020367_050 Hb_006960_050--Hb_020367_050 Hb_002686_250 Hb_002686_250 Hb_006960_050--Hb_002686_250 Hb_001926_030 Hb_001926_030 Hb_004055_150--Hb_001926_030 Hb_004055_150--Hb_002686_250 Hb_000853_230 Hb_000853_230 Hb_004055_150--Hb_000853_230 Hb_004055_150--Hb_006620_020 Hb_004055_150--Hb_005993_050 Hb_033720_010--Hb_023386_020 Hb_033720_010--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_033720_010--Hb_000879_200 Hb_033720_010--Hb_002686_250 Hb_000794_050 Hb_000794_050 Hb_033720_010--Hb_000794_050 Hb_033720_010--Hb_006620_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.8767 3.63354 4.91082 2.50455 5.64842 5.29422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.63911 3.70133 3.40263 2.59096 4.26769

CAGE analysis