Hb_007007_070

Information

Type transcription factor
Description TF Family: TCP
Location Contig7007: 46772-47380
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12020g
description hypothetical protein
nr
ID EYU24385.1
description hypothetical protein MIMGU_mgv1a022855mg, partial [Erythranthe guttata]
swissprot
ID -
description -
trembl
ID K3YLV2
description Uncharacterized protein (Fragment) OS=Setaria italica GN=Si015228m.g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007007_070 0.0 transcription factor TF Family: TCP hypothetical protein MIMGU_mgv1a022855mg, partial [Erythranthe guttata]
2 Hb_000120_160 0.1487176447 - - unnamed protein product [Vitis vinifera]
3 Hb_005496_180 0.1562008973 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
4 Hb_001288_070 0.1617795599 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
5 Hb_001863_150 0.1664609967 - - VQ motif-containing family protein [Populus trichocarpa]
6 Hb_000364_040 0.1682509092 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
7 Hb_005147_040 0.1692367173 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
8 Hb_000062_080 0.1702742757 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
9 Hb_001472_130 0.1709382658 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
10 Hb_000805_230 0.1717226246 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
11 Hb_000107_440 0.1722272078 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
12 Hb_001369_570 0.1774262559 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
13 Hb_002477_120 0.1780197827 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
14 Hb_001959_120 0.1781481709 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
15 Hb_012812_010 0.1783606069 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
16 Hb_006846_020 0.1795250118 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
17 Hb_002915_070 0.1811818644 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
18 Hb_008511_100 0.1837008425 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
19 Hb_002572_050 0.1837973174 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
20 Hb_002154_020 0.1852290305 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_007007_070 Hb_007007_070 Hb_000120_160 Hb_000120_160 Hb_007007_070--Hb_000120_160 Hb_005496_180 Hb_005496_180 Hb_007007_070--Hb_005496_180 Hb_001288_070 Hb_001288_070 Hb_007007_070--Hb_001288_070 Hb_001863_150 Hb_001863_150 Hb_007007_070--Hb_001863_150 Hb_000364_040 Hb_000364_040 Hb_007007_070--Hb_000364_040 Hb_005147_040 Hb_005147_040 Hb_007007_070--Hb_005147_040 Hb_000805_230 Hb_000805_230 Hb_000120_160--Hb_000805_230 Hb_002876_250 Hb_002876_250 Hb_000120_160--Hb_002876_250 Hb_000116_210 Hb_000116_210 Hb_000120_160--Hb_000116_210 Hb_000120_160--Hb_005496_180 Hb_000120_160--Hb_001288_070 Hb_002154_020 Hb_002154_020 Hb_000120_160--Hb_002154_020 Hb_000953_050 Hb_000953_050 Hb_005496_180--Hb_000953_050 Hb_002572_050 Hb_002572_050 Hb_005496_180--Hb_002572_050 Hb_005496_180--Hb_000805_230 Hb_002053_130 Hb_002053_130 Hb_005496_180--Hb_002053_130 Hb_002915_070 Hb_002915_070 Hb_005496_180--Hb_002915_070 Hb_001288_070--Hb_000116_210 Hb_008511_100 Hb_008511_100 Hb_001288_070--Hb_008511_100 Hb_001288_070--Hb_000805_230 Hb_000866_090 Hb_000866_090 Hb_001288_070--Hb_000866_090 Hb_001288_070--Hb_002915_070 Hb_002235_240 Hb_002235_240 Hb_001863_150--Hb_002235_240 Hb_001141_360 Hb_001141_360 Hb_001863_150--Hb_001141_360 Hb_005400_040 Hb_005400_040 Hb_001863_150--Hb_005400_040 Hb_004724_130 Hb_004724_130 Hb_001863_150--Hb_004724_130 Hb_042175_010 Hb_042175_010 Hb_001863_150--Hb_042175_010 Hb_009838_060 Hb_009838_060 Hb_001863_150--Hb_009838_060 Hb_003605_240 Hb_003605_240 Hb_000364_040--Hb_003605_240 Hb_000256_130 Hb_000256_130 Hb_000364_040--Hb_000256_130 Hb_000976_280 Hb_000976_280 Hb_000364_040--Hb_000976_280 Hb_000077_390 Hb_000077_390 Hb_000364_040--Hb_000077_390 Hb_015934_030 Hb_015934_030 Hb_000364_040--Hb_015934_030 Hb_011631_010 Hb_011631_010 Hb_000364_040--Hb_011631_010 Hb_020805_170 Hb_020805_170 Hb_005147_040--Hb_020805_170 Hb_000010_350 Hb_000010_350 Hb_005147_040--Hb_000010_350 Hb_000062_080 Hb_000062_080 Hb_005147_040--Hb_000062_080 Hb_005147_040--Hb_001863_150 Hb_000107_440 Hb_000107_440 Hb_005147_040--Hb_000107_440 Hb_000645_240 Hb_000645_240 Hb_005147_040--Hb_000645_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.942543 10.8633 1.53889 1.25808 0.0828116 1.02757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.987712 1.31967 1.63277 2.57637 1.50583

CAGE analysis