Hb_007007_090

Information

Type -
Description -
Location Contig7007: 50992-60272
Sequence    

Annotation

kegg
ID rcu:RCOM_1613030
description phospholipase d beta, putative (EC:3.1.4.4)
nr
ID XP_002511773.1
description phospholipase d beta, putative [Ricinus communis]
swissprot
ID P93733
description Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=4
trembl
ID B9RDI4
description Phospholipase d beta, putative OS=Ricinus communis GN=RCOM_1613030 PE=4 SV=1
Gene Ontology
ID GO:0003824
description phospholipase d beta 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54832: 51366-59609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007007_090 0.0 - - phospholipase d beta, putative [Ricinus communis]
2 Hb_002375_080 0.0820928781 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001248_170 0.0883898455 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
4 Hb_001677_120 0.0913111053 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
5 Hb_000589_330 0.0927686261 - - kinase, putative [Ricinus communis]
6 Hb_006573_280 0.0979890601 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
7 Hb_003562_040 0.1012961732 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
8 Hb_005074_010 0.10236333 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
9 Hb_175670_010 0.1025735968 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_004837_110 0.1028117263 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
11 Hb_001821_050 0.1076417698 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
12 Hb_005271_180 0.1094133936 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
13 Hb_001013_050 0.109836662 - - unnamed protein product [Coffea canephora]
14 Hb_007102_010 0.1103628862 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
15 Hb_002097_210 0.1108989052 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001046_040 0.1122832351 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_001269_530 0.1138687069 - - ATP-binding cassette transporter, putative [Ricinus communis]
18 Hb_028928_020 0.1140776334 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
19 Hb_000976_340 0.1152580736 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_001913_030 0.1211572917 - - ankyrin repeat protein [Bruguiera gymnorhiza]

Gene co-expression network

sample Hb_007007_090 Hb_007007_090 Hb_002375_080 Hb_002375_080 Hb_007007_090--Hb_002375_080 Hb_001248_170 Hb_001248_170 Hb_007007_090--Hb_001248_170 Hb_001677_120 Hb_001677_120 Hb_007007_090--Hb_001677_120 Hb_000589_330 Hb_000589_330 Hb_007007_090--Hb_000589_330 Hb_006573_280 Hb_006573_280 Hb_007007_090--Hb_006573_280 Hb_003562_040 Hb_003562_040 Hb_007007_090--Hb_003562_040 Hb_002375_080--Hb_001677_120 Hb_007102_010 Hb_007102_010 Hb_002375_080--Hb_007102_010 Hb_004837_110 Hb_004837_110 Hb_002375_080--Hb_004837_110 Hb_001821_050 Hb_001821_050 Hb_002375_080--Hb_001821_050 Hb_002097_130 Hb_002097_130 Hb_002375_080--Hb_002097_130 Hb_008040_060 Hb_008040_060 Hb_001248_170--Hb_008040_060 Hb_002370_060 Hb_002370_060 Hb_001248_170--Hb_002370_060 Hb_000976_340 Hb_000976_340 Hb_001248_170--Hb_000976_340 Hb_001248_170--Hb_006573_280 Hb_002529_080 Hb_002529_080 Hb_001248_170--Hb_002529_080 Hb_001677_120--Hb_001821_050 Hb_001677_120--Hb_006573_280 Hb_004724_300 Hb_004724_300 Hb_001677_120--Hb_004724_300 Hb_004945_050 Hb_004945_050 Hb_001677_120--Hb_004945_050 Hb_001013_050 Hb_001013_050 Hb_000589_330--Hb_001013_050 Hb_001913_030 Hb_001913_030 Hb_000589_330--Hb_001913_030 Hb_003835_030 Hb_003835_030 Hb_000589_330--Hb_003835_030 Hb_000589_330--Hb_002097_130 Hb_001269_530 Hb_001269_530 Hb_000589_330--Hb_001269_530 Hb_000054_140 Hb_000054_140 Hb_006573_280--Hb_000054_140 Hb_006573_280--Hb_002370_060 Hb_004112_050 Hb_004112_050 Hb_006573_280--Hb_004112_050 Hb_000836_220 Hb_000836_220 Hb_006573_280--Hb_000836_220 Hb_005034_010 Hb_005034_010 Hb_003562_040--Hb_005034_010 Hb_001174_030 Hb_001174_030 Hb_003562_040--Hb_001174_030 Hb_005054_280 Hb_005054_280 Hb_003562_040--Hb_005054_280 Hb_005074_010 Hb_005074_010 Hb_003562_040--Hb_005074_010 Hb_175670_010 Hb_175670_010 Hb_003562_040--Hb_175670_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0736199 42.2028 13.3046 22.9759 0.0339957 0.222433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0560157 0.0528988 0.0507779 8.19333 17.7707

CAGE analysis