Hb_007007_120

Information

Type -
Description -
Location Contig7007: 74151-85477
Sequence    

Annotation

kegg
ID pop:POPTR_0002s15320g
description POPTRDRAFT_851914; calcineurin B subunit-related family protein
nr
ID XP_012083509.1
description PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
swissprot
ID Q8S8S2
description Lysophospholipid acyltransferase LPEAT2 OS=Arabidopsis thaliana GN=LPEAT2 PE=1 SV=1
trembl
ID E6NU22
description JHL05D22.3 protein OS=Jatropha curcas GN=JHL05D22.3 PE=4 SV=1
Gene Ontology
ID GO:0003723
description lysophospholipid acyltransferase lpeat2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54836: 74282-76023 , PASA_asmbl_54837: 76125-77575 , PASA_asmbl_54838: 77626-77824 , PASA_asmbl_54839: 78394-85488 , PASA_asmbl_54840: 78647-85481 , PASA_asmbl_54841: 78647-85481 , PASA_asmbl_54842: 79047-79184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007007_120 0.0 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
2 Hb_004052_080 0.0394214899 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003428_010 0.0511241122 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
4 Hb_002876_230 0.0585803299 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
5 Hb_001226_150 0.0591091138 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
6 Hb_003513_010 0.0592278554 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
7 Hb_000339_040 0.0593943786 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
8 Hb_004970_190 0.0613885082 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_013358_040 0.0619087455 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
10 Hb_170416_010 0.0628295157 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
11 Hb_000699_030 0.0645188786 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
12 Hb_005588_080 0.065230627 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
13 Hb_003531_080 0.066583076 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
14 Hb_000205_190 0.0667485224 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
15 Hb_014834_150 0.0672408158 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_002013_020 0.0678908771 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
17 Hb_007765_100 0.0687461444 - - PREDICTED: helicase SKI2W [Jatropha curcas]
18 Hb_000915_180 0.0691994775 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
19 Hb_003861_060 0.0693924074 - - PREDICTED: treacle protein [Jatropha curcas]
20 Hb_005867_070 0.0694285183 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007007_120 Hb_007007_120 Hb_004052_080 Hb_004052_080 Hb_007007_120--Hb_004052_080 Hb_003428_010 Hb_003428_010 Hb_007007_120--Hb_003428_010 Hb_002876_230 Hb_002876_230 Hb_007007_120--Hb_002876_230 Hb_001226_150 Hb_001226_150 Hb_007007_120--Hb_001226_150 Hb_003513_010 Hb_003513_010 Hb_007007_120--Hb_003513_010 Hb_000339_040 Hb_000339_040 Hb_007007_120--Hb_000339_040 Hb_004052_080--Hb_000339_040 Hb_004052_080--Hb_003513_010 Hb_004052_080--Hb_002876_230 Hb_004052_080--Hb_003428_010 Hb_003861_060 Hb_003861_060 Hb_004052_080--Hb_003861_060 Hb_003849_110 Hb_003849_110 Hb_003428_010--Hb_003849_110 Hb_002849_130 Hb_002849_130 Hb_003428_010--Hb_002849_130 Hb_003428_010--Hb_003861_060 Hb_014834_150 Hb_014834_150 Hb_003428_010--Hb_014834_150 Hb_002876_230--Hb_000339_040 Hb_001456_060 Hb_001456_060 Hb_002876_230--Hb_001456_060 Hb_009911_030 Hb_009911_030 Hb_002876_230--Hb_009911_030 Hb_000331_110 Hb_000331_110 Hb_002876_230--Hb_000331_110 Hb_170416_010 Hb_170416_010 Hb_001226_150--Hb_170416_010 Hb_005867_070 Hb_005867_070 Hb_001226_150--Hb_005867_070 Hb_005000_170 Hb_005000_170 Hb_001226_150--Hb_005000_170 Hb_001226_150--Hb_000339_040 Hb_007894_150 Hb_007894_150 Hb_001226_150--Hb_007894_150 Hb_000137_040 Hb_000137_040 Hb_003513_010--Hb_000137_040 Hb_003513_010--Hb_014834_150 Hb_000869_020 Hb_000869_020 Hb_003513_010--Hb_000869_020 Hb_003513_010--Hb_003861_060 Hb_000339_040--Hb_001456_060 Hb_000339_040--Hb_009911_030 Hb_004837_180 Hb_004837_180 Hb_000339_040--Hb_004837_180 Hb_000339_040--Hb_005867_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.1897 8.20604 11.3095 7.02885 7.2707 7.96696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.69347 8.07252 8.71711 6.05142 9.66331

CAGE analysis