Hb_007009_010

Information

Type transcription factor
Description TF Family: TRAF
Location Contig7009: 20072-21376
Sequence    

Annotation

kegg
ID pop:POPTR_0001s11160g
description POPTRDRAFT_829424; hypothetical protein
nr
ID XP_011026817.1
description PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
swissprot
ID Q8RX01
description BTB/POZ domain-containing protein At3g05675 OS=Arabidopsis thaliana GN=At3g05675 PE=2 SV=1
trembl
ID B9GK97
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s11160g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54852: 19331-21542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007009_010 0.0 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
2 Hb_009615_070 0.0616277061 - - type X protein phosphatase-II [Populus trichocarpa]
3 Hb_000336_240 0.0752751976 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
4 Hb_003605_090 0.0758380764 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
5 Hb_003502_090 0.08186657 - - ATP synthase subunit d, putative [Ricinus communis]
6 Hb_003414_050 0.0832249629 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
7 Hb_010883_050 0.084993981 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
8 Hb_001205_150 0.0861582731 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
9 Hb_002375_070 0.0865373714 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003671_020 0.0881073079 - - calcineurin B, putative [Ricinus communis]
11 Hb_000805_240 0.0888748982 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
12 Hb_000692_220 0.0888945059 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
13 Hb_000477_060 0.0908935478 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
14 Hb_002007_210 0.0910837896 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
15 Hb_154948_040 0.0927260444 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
16 Hb_000161_060 0.0927765783 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
17 Hb_023278_020 0.0928116867 - - Peroxin 3 isoform 1 [Theobroma cacao]
18 Hb_003697_040 0.0930343243 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
19 Hb_000363_360 0.0932274782 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
20 Hb_000703_350 0.093577552 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]

Gene co-expression network

sample Hb_007009_010 Hb_007009_010 Hb_009615_070 Hb_009615_070 Hb_007009_010--Hb_009615_070 Hb_000336_240 Hb_000336_240 Hb_007009_010--Hb_000336_240 Hb_003605_090 Hb_003605_090 Hb_007009_010--Hb_003605_090 Hb_003502_090 Hb_003502_090 Hb_007009_010--Hb_003502_090 Hb_003414_050 Hb_003414_050 Hb_007009_010--Hb_003414_050 Hb_010883_050 Hb_010883_050 Hb_007009_010--Hb_010883_050 Hb_023278_020 Hb_023278_020 Hb_009615_070--Hb_023278_020 Hb_009615_070--Hb_003605_090 Hb_004889_010 Hb_004889_010 Hb_009615_070--Hb_004889_010 Hb_004899_370 Hb_004899_370 Hb_009615_070--Hb_004899_370 Hb_089032_030 Hb_089032_030 Hb_009615_070--Hb_089032_030 Hb_000336_240--Hb_010883_050 Hb_000336_240--Hb_004889_010 Hb_000363_360 Hb_000363_360 Hb_000336_240--Hb_000363_360 Hb_002007_210 Hb_002007_210 Hb_000336_240--Hb_002007_210 Hb_000638_170 Hb_000638_170 Hb_000336_240--Hb_000638_170 Hb_003697_040 Hb_003697_040 Hb_003605_090--Hb_003697_040 Hb_000477_060 Hb_000477_060 Hb_003605_090--Hb_000477_060 Hb_000703_350 Hb_000703_350 Hb_003605_090--Hb_000703_350 Hb_004934_100 Hb_004934_100 Hb_003605_090--Hb_004934_100 Hb_001252_130 Hb_001252_130 Hb_003605_090--Hb_001252_130 Hb_003108_020 Hb_003108_020 Hb_003502_090--Hb_003108_020 Hb_000479_190 Hb_000479_190 Hb_003502_090--Hb_000479_190 Hb_001234_100 Hb_001234_100 Hb_003502_090--Hb_001234_100 Hb_001268_050 Hb_001268_050 Hb_003502_090--Hb_001268_050 Hb_003502_090--Hb_003605_090 Hb_154948_040 Hb_154948_040 Hb_003502_090--Hb_154948_040 Hb_003671_020 Hb_003671_020 Hb_003414_050--Hb_003671_020 Hb_003414_050--Hb_009615_070 Hb_000701_100 Hb_000701_100 Hb_003414_050--Hb_000701_100 Hb_000125_100 Hb_000125_100 Hb_003414_050--Hb_000125_100 Hb_000483_390 Hb_000483_390 Hb_003414_050--Hb_000483_390 Hb_000436_130 Hb_000436_130 Hb_010883_050--Hb_000436_130 Hb_006420_080 Hb_006420_080 Hb_010883_050--Hb_006420_080 Hb_010883_050--Hb_002007_210 Hb_076233_040 Hb_076233_040 Hb_010883_050--Hb_076233_040 Hb_010883_050--Hb_003697_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0756 6.22885 7.28062 21.1021 7.07852 12.8429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9389 24.4414 19.6426 7.76577 10.2096

CAGE analysis