Hb_007012_020

Information

Type -
Description -
Location Contig7012: 14734-19758
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11940g
description hypothetical protein
nr
ID XP_006383140.1
description hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GHL2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11940g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54863: 14706-19788 , PASA_asmbl_54864: 14778-16345 , PASA_asmbl_54865: 15331-19750 , PASA_asmbl_54867: 20414-23896
cDNA
(Sanger)
(ID:Location)		 053_M19.ab1: 14883-19787

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007012_020 0.0 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
2 Hb_000380_010 0.1058495261 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
3 Hb_006502_080 0.1160313678 - - -
4 Hb_009543_030 0.1167337071 - - prefoldin subunit 1 [Jatropha curcas]
5 Hb_005656_050 0.1230067608 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
6 Hb_067776_010 0.1266426593 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
7 Hb_000684_230 0.1268738757 - - 40S ribosomal protein S23, putative [Ricinus communis]
8 Hb_007317_060 0.1327854456 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
9 Hb_000656_100 0.1329804886 - - PREDICTED: uncharacterized protein LOC105633651 [Jatropha curcas]
10 Hb_000329_770 0.1351426681 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000364_150 0.1355126047 - - -
12 Hb_000648_030 0.1372327618 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
13 Hb_136731_010 0.1375882391 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
14 Hb_003687_020 0.1392036966 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
15 Hb_032927_010 0.1396092158 - - -
16 Hb_000062_420 0.1409517393 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000812_040 0.1423142754 - - zinc finger family protein [Populus trichocarpa]
18 Hb_007193_100 0.1439521928 - - syntaxin family protein [Populus trichocarpa]
19 Hb_008173_120 0.1442292408 - - conserved hypothetical protein [Ricinus communis]
20 Hb_022092_090 0.1448592217 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]

Gene co-expression network

sample Hb_007012_020 Hb_007012_020 Hb_000380_010 Hb_000380_010 Hb_007012_020--Hb_000380_010 Hb_006502_080 Hb_006502_080 Hb_007012_020--Hb_006502_080 Hb_009543_030 Hb_009543_030 Hb_007012_020--Hb_009543_030 Hb_005656_050 Hb_005656_050 Hb_007012_020--Hb_005656_050 Hb_067776_010 Hb_067776_010 Hb_007012_020--Hb_067776_010 Hb_000684_230 Hb_000684_230 Hb_007012_020--Hb_000684_230 Hb_007317_060 Hb_007317_060 Hb_000380_010--Hb_007317_060 Hb_008173_120 Hb_008173_120 Hb_000380_010--Hb_008173_120 Hb_005117_010 Hb_005117_010 Hb_000380_010--Hb_005117_010 Hb_015057_010 Hb_015057_010 Hb_000380_010--Hb_015057_010 Hb_000380_010--Hb_009543_030 Hb_032927_010 Hb_032927_010 Hb_006502_080--Hb_032927_010 Hb_000812_040 Hb_000812_040 Hb_006502_080--Hb_000812_040 Hb_136731_010 Hb_136731_010 Hb_006502_080--Hb_136731_010 Hb_006502_080--Hb_067776_010 Hb_000329_770 Hb_000329_770 Hb_006502_080--Hb_000329_770 Hb_000103_140 Hb_000103_140 Hb_009543_030--Hb_000103_140 Hb_000175_070 Hb_000175_070 Hb_009543_030--Hb_000175_070 Hb_000510_090 Hb_000510_090 Hb_009543_030--Hb_000510_090 Hb_007193_100 Hb_007193_100 Hb_009543_030--Hb_007193_100 Hb_004453_150 Hb_004453_150 Hb_009543_030--Hb_004453_150 Hb_009543_030--Hb_000684_230 Hb_005656_050--Hb_000380_010 Hb_005656_050--Hb_007317_060 Hb_022092_090 Hb_022092_090 Hb_005656_050--Hb_022092_090 Hb_005656_050--Hb_005117_010 Hb_000963_190 Hb_000963_190 Hb_005656_050--Hb_000963_190 Hb_067776_010--Hb_000812_040 Hb_067776_010--Hb_032927_010 Hb_007441_270 Hb_007441_270 Hb_067776_010--Hb_007441_270 Hb_000648_030 Hb_000648_030 Hb_067776_010--Hb_000648_030 Hb_012675_070 Hb_012675_070 Hb_067776_010--Hb_012675_070 Hb_000003_730 Hb_000003_730 Hb_067776_010--Hb_000003_730 Hb_000684_230--Hb_008173_120 Hb_000684_230--Hb_007193_100 Hb_000024_080 Hb_000024_080 Hb_000684_230--Hb_000024_080 Hb_000684_230--Hb_000003_730 Hb_000684_230--Hb_007317_060 Hb_000684_230--Hb_000103_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.96484 2.02867 2.12848 9.23989 13.7976 39.7926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1077 20.2255 11.4035 6.51614 4.2989

CAGE analysis