Hb_007012_030

Information

Type -
Description -
Location Contig7012: 20395-27179
Sequence    

Annotation

kegg
ID rcu:RCOM_0172970
description hypothetical protein
nr
ID XP_012065270.1
description PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
swissprot
ID Q91WU4
description Transmembrane and coiled-coil domain-containing protein 4 OS=Mus musculus GN=Tmco4 PE=2 SV=2
trembl
ID B9T6E0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0172970 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane and coiled-coil domain-containing protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54867: 20414-23896 , PASA_asmbl_54868: 24066-26030 , PASA_asmbl_54869: 24752-26030 , PASA_asmbl_54870: 26050-27185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007012_030 0.0 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
2 Hb_000748_090 0.0377338711 - - glucose inhibited division protein A, putative [Ricinus communis]
3 Hb_002600_070 0.057498312 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
4 Hb_068804_090 0.0620306839 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
5 Hb_000617_250 0.072320648 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
6 Hb_000482_050 0.0738203809 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
7 Hb_004324_360 0.0776151322 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
8 Hb_004629_030 0.0790085325 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_002973_110 0.0795859272 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_114310_070 0.0799049559 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
11 Hb_013459_020 0.080484568 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
12 Hb_002411_190 0.0810714048 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
13 Hb_025194_050 0.0818855642 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
14 Hb_033312_010 0.0847179087 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_009158_060 0.0855350979 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
16 Hb_013749_050 0.086330731 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
17 Hb_000108_020 0.0868104373 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
18 Hb_001511_090 0.0873362143 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
19 Hb_000169_020 0.087762636 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
20 Hb_005260_030 0.0890355764 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]

Gene co-expression network

sample Hb_007012_030 Hb_007012_030 Hb_000748_090 Hb_000748_090 Hb_007012_030--Hb_000748_090 Hb_002600_070 Hb_002600_070 Hb_007012_030--Hb_002600_070 Hb_068804_090 Hb_068804_090 Hb_007012_030--Hb_068804_090 Hb_000617_250 Hb_000617_250 Hb_007012_030--Hb_000617_250 Hb_000482_050 Hb_000482_050 Hb_007012_030--Hb_000482_050 Hb_004324_360 Hb_004324_360 Hb_007012_030--Hb_004324_360 Hb_000748_090--Hb_002600_070 Hb_000748_090--Hb_068804_090 Hb_000748_090--Hb_004324_360 Hb_021596_020 Hb_021596_020 Hb_000748_090--Hb_021596_020 Hb_000748_090--Hb_000482_050 Hb_000771_170 Hb_000771_170 Hb_002600_070--Hb_000771_170 Hb_001277_340 Hb_001277_340 Hb_002600_070--Hb_001277_340 Hb_002600_070--Hb_000482_050 Hb_009158_060 Hb_009158_060 Hb_002600_070--Hb_009158_060 Hb_013749_050 Hb_013749_050 Hb_068804_090--Hb_013749_050 Hb_000243_120 Hb_000243_120 Hb_068804_090--Hb_000243_120 Hb_030736_040 Hb_030736_040 Hb_068804_090--Hb_030736_040 Hb_004629_030 Hb_004629_030 Hb_068804_090--Hb_004629_030 Hb_025194_050 Hb_025194_050 Hb_000617_250--Hb_025194_050 Hb_001421_090 Hb_001421_090 Hb_000617_250--Hb_001421_090 Hb_000376_210 Hb_000376_210 Hb_000617_250--Hb_000376_210 Hb_000617_250--Hb_000482_050 Hb_000617_250--Hb_068804_090 Hb_002828_060 Hb_002828_060 Hb_000482_050--Hb_002828_060 Hb_000482_050--Hb_004629_030 Hb_001396_020 Hb_001396_020 Hb_000482_050--Hb_001396_020 Hb_002684_020 Hb_002684_020 Hb_004324_360--Hb_002684_020 Hb_000975_210 Hb_000975_210 Hb_004324_360--Hb_000975_210 Hb_000788_030 Hb_000788_030 Hb_004324_360--Hb_000788_030 Hb_001488_020 Hb_001488_020 Hb_004324_360--Hb_001488_020 Hb_000476_060 Hb_000476_060 Hb_004324_360--Hb_000476_060 Hb_033312_040 Hb_033312_040 Hb_004324_360--Hb_033312_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.47625 7.22192 10.4161 6.31695 3.12299 4.31963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.54338 3.49287 2.71077 5.71628 13.3877

CAGE analysis