Hb_007012_060

Information

Type -
Description -
Location Contig7012: 42402-47783
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa006636mg
description hypothetical protein
nr
ID XP_012065317.1
description PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
swissprot
ID Q9SD33
description UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2 SV=2
trembl
ID A0A067LH71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06481 PE=4 SV=1
Gene Ontology
ID GO:0004822
description upf0183 protein at3g51130 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54876: 42365-43488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007012_060 0.0 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
2 Hb_143766_010 0.0742934719 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
3 Hb_094608_010 0.0743886589 - - PREDICTED: uncharacterized protein LOC105630444 isoform X3 [Jatropha curcas]
4 Hb_007441_040 0.0760675406 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
5 Hb_000102_020 0.0772648318 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
6 Hb_005181_030 0.080098547 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
7 Hb_002830_020 0.0803830679 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_001505_020 0.0826574384 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
9 Hb_004157_030 0.0884639542 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
10 Hb_017491_060 0.0895243147 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
11 Hb_006541_010 0.0897079285 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
12 Hb_000000_170 0.0897901103 - - defender against cell death, putative [Ricinus communis]
13 Hb_006816_530 0.0899137726 - - 60S ribosomal protein L18, putative [Ricinus communis]
14 Hb_001433_050 0.0915547318 - - 60S ribosomal protein L18, putative [Ricinus communis]
15 Hb_001616_040 0.0916316844 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
16 Hb_012022_120 0.0918190748 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
17 Hb_009182_010 0.0918720841 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
18 Hb_000270_370 0.0919009987 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
19 Hb_010042_010 0.0933237449 - - Urease accessory protein ureD, putative [Ricinus communis]
20 Hb_011628_040 0.0946934955 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]

Gene co-expression network

sample Hb_007012_060 Hb_007012_060 Hb_143766_010 Hb_143766_010 Hb_007012_060--Hb_143766_010 Hb_094608_010 Hb_094608_010 Hb_007012_060--Hb_094608_010 Hb_007441_040 Hb_007441_040 Hb_007012_060--Hb_007441_040 Hb_000102_020 Hb_000102_020 Hb_007012_060--Hb_000102_020 Hb_005181_030 Hb_005181_030 Hb_007012_060--Hb_005181_030 Hb_002830_020 Hb_002830_020 Hb_007012_060--Hb_002830_020 Hb_004102_070 Hb_004102_070 Hb_143766_010--Hb_004102_070 Hb_027654_050 Hb_027654_050 Hb_143766_010--Hb_027654_050 Hb_010175_040 Hb_010175_040 Hb_143766_010--Hb_010175_040 Hb_021596_090 Hb_021596_090 Hb_143766_010--Hb_021596_090 Hb_009182_010 Hb_009182_010 Hb_143766_010--Hb_009182_010 Hb_094608_010--Hb_002830_020 Hb_007576_170 Hb_007576_170 Hb_094608_010--Hb_007576_170 Hb_094608_010--Hb_005181_030 Hb_000877_020 Hb_000877_020 Hb_094608_010--Hb_000877_020 Hb_101705_030 Hb_101705_030 Hb_094608_010--Hb_101705_030 Hb_007441_040--Hb_000102_020 Hb_007441_040--Hb_009182_010 Hb_006541_010 Hb_006541_010 Hb_007441_040--Hb_006541_010 Hb_001814_050 Hb_001814_050 Hb_007441_040--Hb_001814_050 Hb_000656_170 Hb_000656_170 Hb_007441_040--Hb_000656_170 Hb_009051_030 Hb_009051_030 Hb_000102_020--Hb_009051_030 Hb_000261_140 Hb_000261_140 Hb_000102_020--Hb_000261_140 Hb_000102_020--Hb_000656_170 Hb_000102_020--Hb_009182_010 Hb_001214_160 Hb_001214_160 Hb_000102_020--Hb_001214_160 Hb_001279_360 Hb_001279_360 Hb_005181_030--Hb_001279_360 Hb_004459_040 Hb_004459_040 Hb_005181_030--Hb_004459_040 Hb_002687_170 Hb_002687_170 Hb_005181_030--Hb_002687_170 Hb_004157_030 Hb_004157_030 Hb_005181_030--Hb_004157_030 Hb_001085_120 Hb_001085_120 Hb_005181_030--Hb_001085_120 Hb_002431_050 Hb_002431_050 Hb_002830_020--Hb_002431_050 Hb_012022_120 Hb_012022_120 Hb_002830_020--Hb_012022_120 Hb_002864_050 Hb_002864_050 Hb_002830_020--Hb_002864_050 Hb_000201_120 Hb_000201_120 Hb_002830_020--Hb_000201_120 Hb_003581_150 Hb_003581_150 Hb_002830_020--Hb_003581_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.965771 0.287576 1.08602 1.10419 1.0391 1.5787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.69078 3.36996 1.87451 1.31739 0.453925

CAGE analysis