Hb_007014_020

Information

Type -
Description -
Location Contig7014: 8736-16342
Sequence    

Annotation

kegg
ID tcc:TCM_003025
description DNA/RNA polymerases superfamily protein
nr
ID XP_012068520.1
description PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID Q8LNB2
description Putative retroelement OS=Oryza sativa subsp. japonica GN=OSJNBa0047G15.15 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007014_020 0.0 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
2 Hb_147844_010 1.6204e-05 - - putative 60S ribosomal protein L37 [Aegilops tauschii]
3 Hb_025864_010 0.0001015443 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_010907_010 0.0001106393 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
5 Hb_007719_020 0.0001859394 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
6 Hb_004667_010 0.0002133387 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_114981_010 0.0002526637 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_012535_030 0.0003186685 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_144850_070 0.0003268649 - - OSJNBa0032N05.11 [Oryza sativa Japonica Group]
10 Hb_034066_010 0.0003718604 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_001446_050 0.0003847583 - - putative polyprotein [Oryza sativa Japonica Group]
12 Hb_010132_070 0.0003998287 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_010051_010 0.0004103961 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_033123_010 0.0004593655 - - Putative polyprotein [Oryza sativa Japonica Group]
15 Hb_007251_010 0.0005197808 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
16 Hb_007332_010 0.0007399227 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
17 Hb_007167_100 0.0007476902 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_000466_180 0.0008928904 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_013781_010 0.0011822972 - - hypothetical protein VITISV_030726 [Vitis vinifera]
20 Hb_015337_010 0.0012171688 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_007014_020 Hb_007014_020 Hb_147844_010 Hb_147844_010 Hb_007014_020--Hb_147844_010 Hb_025864_010 Hb_025864_010 Hb_007014_020--Hb_025864_010 Hb_010907_010 Hb_010907_010 Hb_007014_020--Hb_010907_010 Hb_007719_020 Hb_007719_020 Hb_007014_020--Hb_007719_020 Hb_004667_010 Hb_004667_010 Hb_007014_020--Hb_004667_010 Hb_114981_010 Hb_114981_010 Hb_007014_020--Hb_114981_010 Hb_147844_010--Hb_010907_010 Hb_147844_010--Hb_025864_010 Hb_147844_010--Hb_007719_020 Hb_147844_010--Hb_004667_010 Hb_147844_010--Hb_114981_010 Hb_025864_010--Hb_010907_010 Hb_001446_050 Hb_001446_050 Hb_025864_010--Hb_001446_050 Hb_025864_010--Hb_007719_020 Hb_010051_010 Hb_010051_010 Hb_025864_010--Hb_010051_010 Hb_010907_010--Hb_007719_020 Hb_010907_010--Hb_004667_010 Hb_010907_010--Hb_114981_010 Hb_012535_030 Hb_012535_030 Hb_010907_010--Hb_012535_030 Hb_007719_020--Hb_004667_010 Hb_007719_020--Hb_114981_010 Hb_007719_020--Hb_012535_030 Hb_144850_070 Hb_144850_070 Hb_007719_020--Hb_144850_070 Hb_004667_010--Hb_114981_010 Hb_004667_010--Hb_012535_030 Hb_004667_010--Hb_144850_070 Hb_034066_010 Hb_034066_010 Hb_004667_010--Hb_034066_010 Hb_114981_010--Hb_012535_030 Hb_114981_010--Hb_144850_070 Hb_114981_010--Hb_034066_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00365727 0.0197597

CAGE analysis