Hb_007017_030

Information

Type -
Description -
Location Contig7017: 23807-27300
Sequence    

Annotation

kegg
ID pop:POPTR_0008s19600g
description POPTRDRAFT_565211; hypothetical protein
nr
ID XP_012091996.1
description PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21738 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54880: 23811-27178
cDNA
(Sanger)
(ID:Location)		 026_I14.ab1: 23813-26842

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007017_030 0.0 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
2 Hb_002893_080 0.0551925955 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
3 Hb_001279_150 0.0582027326 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
4 Hb_008406_190 0.0627628042 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
5 Hb_001828_190 0.0672449374 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
6 Hb_003633_030 0.0680506844 - - f-actin capping protein alpha, putative [Ricinus communis]
7 Hb_015934_070 0.0683103535 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
8 Hb_000054_090 0.0694713674 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000081_160 0.0697444639 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
10 Hb_002473_130 0.0726663058 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
11 Hb_003525_010 0.0741345949 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
12 Hb_000441_200 0.0745202127 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
13 Hb_001579_220 0.0754158072 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
14 Hb_004109_310 0.0756913341 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
15 Hb_000120_670 0.0764855353 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
16 Hb_026198_070 0.0765845047 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
17 Hb_003226_140 0.0773038198 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
18 Hb_031862_100 0.0780298499 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001318_280 0.0800818393 - - Protein FAM18B, putative [Ricinus communis]
20 Hb_003918_010 0.0812800509 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_007017_030 Hb_007017_030 Hb_002893_080 Hb_002893_080 Hb_007017_030--Hb_002893_080 Hb_001279_150 Hb_001279_150 Hb_007017_030--Hb_001279_150 Hb_008406_190 Hb_008406_190 Hb_007017_030--Hb_008406_190 Hb_001828_190 Hb_001828_190 Hb_007017_030--Hb_001828_190 Hb_003633_030 Hb_003633_030 Hb_007017_030--Hb_003633_030 Hb_015934_070 Hb_015934_070 Hb_007017_030--Hb_015934_070 Hb_002893_080--Hb_008406_190 Hb_000599_300 Hb_000599_300 Hb_002893_080--Hb_000599_300 Hb_002893_080--Hb_003633_030 Hb_000116_440 Hb_000116_440 Hb_002893_080--Hb_000116_440 Hb_001579_220 Hb_001579_220 Hb_002893_080--Hb_001579_220 Hb_003750_050 Hb_003750_050 Hb_001279_150--Hb_003750_050 Hb_000215_110 Hb_000215_110 Hb_001279_150--Hb_000215_110 Hb_005489_060 Hb_005489_060 Hb_001279_150--Hb_005489_060 Hb_000120_670 Hb_000120_670 Hb_001279_150--Hb_000120_670 Hb_002182_080 Hb_002182_080 Hb_001279_150--Hb_002182_080 Hb_000103_080 Hb_000103_080 Hb_008406_190--Hb_000103_080 Hb_003333_060 Hb_003333_060 Hb_008406_190--Hb_003333_060 Hb_010423_040 Hb_010423_040 Hb_008406_190--Hb_010423_040 Hb_008406_190--Hb_001828_190 Hb_001090_040 Hb_001090_040 Hb_001828_190--Hb_001090_040 Hb_003525_010 Hb_003525_010 Hb_001828_190--Hb_003525_010 Hb_002226_070 Hb_002226_070 Hb_001828_190--Hb_002226_070 Hb_007691_030 Hb_007691_030 Hb_001828_190--Hb_007691_030 Hb_000092_170 Hb_000092_170 Hb_001828_190--Hb_000092_170 Hb_033594_120 Hb_033594_120 Hb_003633_030--Hb_033594_120 Hb_003633_030--Hb_000599_300 Hb_000421_220 Hb_000421_220 Hb_003633_030--Hb_000421_220 Hb_003633_030--Hb_001279_150 Hb_031862_100 Hb_031862_100 Hb_015934_070--Hb_031862_100 Hb_025240_040 Hb_025240_040 Hb_015934_070--Hb_025240_040 Hb_127552_030 Hb_127552_030 Hb_015934_070--Hb_127552_030 Hb_006907_130 Hb_006907_130 Hb_015934_070--Hb_006907_130 Hb_001369_690 Hb_001369_690 Hb_015934_070--Hb_001369_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2474 7.05759 8.74092 17.5684 17.5141 19.4751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6244 22.3908 14.7816 19.2804 12.1272

CAGE analysis