Hb_007017_050

Information

Type -
Description -
Location Contig7017: 36540-36830
Sequence    

Annotation

kegg
ID rcu:RCOM_0699300
description hypothetical protein
nr
ID XP_002520185.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O04547
description CLAVATA3/ESR (CLE)-related protein 26 OS=Arabidopsis thaliana GN=CLE26 PE=2 SV=1
trembl
ID B9S2G6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0699300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54883: 36736-37053
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007017_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_168241_010 0.0683496778 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
3 Hb_184109_010 0.0948313034 - - PREDICTED: transcription factor WER-like [Jatropha curcas]
4 Hb_004375_090 0.1374229893 - - hypothetical protein JCGZ_13971 [Jatropha curcas]
5 Hb_001104_030 0.1374415554 - - PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
6 Hb_141016_010 0.1374852413 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
7 Hb_009711_060 0.1377336866 - - -
8 Hb_151697_010 0.1377513858 - - clathrin assembly protein, putative [Ricinus communis]
9 Hb_183658_010 0.1378314725 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_006469_100 0.1379991067 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
11 Hb_002106_020 0.1380880687 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
12 Hb_000574_060 0.1381475191 - - hypothetical protein F775_19731 [Aegilops tauschii]
13 Hb_027802_030 0.1382593621 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
14 Hb_000556_210 0.1383630963 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
15 Hb_168078_010 0.138578041 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
16 Hb_003363_100 0.1389966933 - - -
17 Hb_002284_140 0.1390419663 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
18 Hb_004092_020 0.1391023886 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
19 Hb_000506_060 0.1393669942 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Malus domestica]
20 Hb_007524_020 0.140005516 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]

Gene co-expression network

sample Hb_007017_050 Hb_007017_050 Hb_168241_010 Hb_168241_010 Hb_007017_050--Hb_168241_010 Hb_184109_010 Hb_184109_010 Hb_007017_050--Hb_184109_010 Hb_004375_090 Hb_004375_090 Hb_007017_050--Hb_004375_090 Hb_001104_030 Hb_001104_030 Hb_007017_050--Hb_001104_030 Hb_141016_010 Hb_141016_010 Hb_007017_050--Hb_141016_010 Hb_009711_060 Hb_009711_060 Hb_007017_050--Hb_009711_060 Hb_168241_010--Hb_184109_010 Hb_071116_010 Hb_071116_010 Hb_168241_010--Hb_071116_010 Hb_000556_030 Hb_000556_030 Hb_168241_010--Hb_000556_030 Hb_000866_350 Hb_000866_350 Hb_168241_010--Hb_000866_350 Hb_000053_140 Hb_000053_140 Hb_168241_010--Hb_000053_140 Hb_184109_010--Hb_000866_350 Hb_011063_040 Hb_011063_040 Hb_184109_010--Hb_011063_040 Hb_001318_160 Hb_001318_160 Hb_184109_010--Hb_001318_160 Hb_004994_270 Hb_004994_270 Hb_184109_010--Hb_004994_270 Hb_004375_090--Hb_001104_030 Hb_004375_090--Hb_141016_010 Hb_004375_090--Hb_009711_060 Hb_151697_010 Hb_151697_010 Hb_004375_090--Hb_151697_010 Hb_183658_010 Hb_183658_010 Hb_004375_090--Hb_183658_010 Hb_006469_100 Hb_006469_100 Hb_004375_090--Hb_006469_100 Hb_001104_030--Hb_141016_010 Hb_001104_030--Hb_009711_060 Hb_001104_030--Hb_151697_010 Hb_001104_030--Hb_183658_010 Hb_002106_020 Hb_002106_020 Hb_001104_030--Hb_002106_020 Hb_141016_010--Hb_006469_100 Hb_000574_060 Hb_000574_060 Hb_141016_010--Hb_000574_060 Hb_027802_030 Hb_027802_030 Hb_141016_010--Hb_027802_030 Hb_141016_010--Hb_009711_060 Hb_009711_060--Hb_151697_010 Hb_009711_060--Hb_183658_010 Hb_009711_060--Hb_002106_020 Hb_000556_210 Hb_000556_210 Hb_009711_060--Hb_000556_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.4667 1.73689 0.162681 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis