Hb_007017_060

Information

Type -
Description -
Location Contig7017: 50549-59740
Sequence    

Annotation

kegg
ID cit:102628259
description 5-formyltetrahydrofolate cyclo-ligase-like
nr
ID XP_012091993.1
description PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
swissprot
ID Q8L539
description 5-formyltetrahydrofolate cyclo-ligase, mitochondrial OS=Arabidopsis thaliana GN=5FCL PE=1 SV=1
trembl
ID A0A0B0N088
description 5-formyltetrahydrofolate cyclo-ligase OS=Gossypium arboreum GN=F383_29767 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54884: 51304-51674 , PASA_asmbl_54885: 59456-59796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007017_060 0.0 - - PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
2 Hb_005714_040 0.1183634634 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000058_040 0.1204788066 - - PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial [Jatropha curcas]
4 Hb_000183_070 0.123573895 - - -
5 Hb_000264_060 0.1328060718 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
6 Hb_001663_110 0.1332329739 - - RNA binding protein, putative [Ricinus communis]
7 Hb_009801_010 0.136202185 - - ATPase inhibitor, putative [Ricinus communis]
8 Hb_000307_170 0.1380305775 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
9 Hb_000684_300 0.1412038205 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]
10 Hb_003813_200 0.1415570711 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_006501_150 0.1424250354 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000976_270 0.1429048184 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
13 Hb_004241_070 0.1431421734 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
14 Hb_143766_090 0.1433873807 - - 60S ribosomal protein L31B [Hevea brasiliensis]
15 Hb_000015_010 0.1452944295 - - -
16 Hb_006452_190 0.1478656169 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
17 Hb_004374_010 0.1479668828 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
18 Hb_006261_040 0.148587149 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
19 Hb_171554_090 0.1486012731 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
20 Hb_164010_020 0.1487773452 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]

Gene co-expression network

sample Hb_007017_060 Hb_007017_060 Hb_005714_040 Hb_005714_040 Hb_007017_060--Hb_005714_040 Hb_000058_040 Hb_000058_040 Hb_007017_060--Hb_000058_040 Hb_000183_070 Hb_000183_070 Hb_007017_060--Hb_000183_070 Hb_000264_060 Hb_000264_060 Hb_007017_060--Hb_000264_060 Hb_001663_110 Hb_001663_110 Hb_007017_060--Hb_001663_110 Hb_009801_010 Hb_009801_010 Hb_007017_060--Hb_009801_010 Hb_005714_040--Hb_000183_070 Hb_005389_140 Hb_005389_140 Hb_005714_040--Hb_005389_140 Hb_005015_010 Hb_005015_010 Hb_005714_040--Hb_005015_010 Hb_000590_090 Hb_000590_090 Hb_005714_040--Hb_000590_090 Hb_006452_190 Hb_006452_190 Hb_005714_040--Hb_006452_190 Hb_000188_190 Hb_000188_190 Hb_005714_040--Hb_000188_190 Hb_000529_080 Hb_000529_080 Hb_000058_040--Hb_000529_080 Hb_004450_060 Hb_004450_060 Hb_000058_040--Hb_004450_060 Hb_000088_200 Hb_000088_200 Hb_000058_040--Hb_000088_200 Hb_003467_010 Hb_003467_010 Hb_000058_040--Hb_003467_010 Hb_000058_040--Hb_001663_110 Hb_005237_060 Hb_005237_060 Hb_000058_040--Hb_005237_060 Hb_001437_300 Hb_001437_300 Hb_000183_070--Hb_001437_300 Hb_000183_070--Hb_005015_010 Hb_006501_150 Hb_006501_150 Hb_000183_070--Hb_006501_150 Hb_000183_070--Hb_006452_190 Hb_000183_070--Hb_005389_140 Hb_001348_140 Hb_001348_140 Hb_000264_060--Hb_001348_140 Hb_010298_020 Hb_010298_020 Hb_000264_060--Hb_010298_020 Hb_000322_170 Hb_000322_170 Hb_000264_060--Hb_000322_170 Hb_074683_020 Hb_074683_020 Hb_000264_060--Hb_074683_020 Hb_000093_130 Hb_000093_130 Hb_000264_060--Hb_000093_130 Hb_009615_110 Hb_009615_110 Hb_000264_060--Hb_009615_110 Hb_000976_270 Hb_000976_270 Hb_001663_110--Hb_000976_270 Hb_004447_030 Hb_004447_030 Hb_001663_110--Hb_004447_030 Hb_000205_120 Hb_000205_120 Hb_001663_110--Hb_000205_120 Hb_000236_280 Hb_000236_280 Hb_001663_110--Hb_000236_280 Hb_012305_070 Hb_012305_070 Hb_001663_110--Hb_012305_070 Hb_001663_110--Hb_005237_060 Hb_001956_120 Hb_001956_120 Hb_009801_010--Hb_001956_120 Hb_009801_010--Hb_005015_010 Hb_000392_280 Hb_000392_280 Hb_009801_010--Hb_000392_280 Hb_000307_170 Hb_000307_170 Hb_009801_010--Hb_000307_170 Hb_009801_010--Hb_000976_270 Hb_003581_110 Hb_003581_110 Hb_009801_010--Hb_003581_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25501 0.770127 0.628598 0.0437191 2.49999 1.48576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18439 1.26436 0.247134 0.186725 0.274892

CAGE analysis