Hb_007017_070

Information

Type -
Description -
Location Contig7017: 60840-77309
Sequence    

Annotation

kegg
ID rcu:RCOM_0699240
description Phospholipid-transporting ATPase, putative (EC:3.6.3.1)
nr
ID XP_012091990.1
description PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
swissprot
ID Q9XIE6
description Phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3 PE=1 SV=2
trembl
ID A0A067JBW1
description Phospholipid-transporting ATPase OS=Jatropha curcas GN=JCGZ_21733 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phospholipid-transporting atpase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54886: 66091-68502 , PASA_asmbl_54887: 71382-76948 , PASA_asmbl_54888: 74073-74237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007017_070 0.0 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
2 Hb_004410_070 0.054846367 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
3 Hb_000227_310 0.0552599967 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
4 Hb_000723_110 0.0575548938 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
5 Hb_030545_030 0.0579962681 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
6 Hb_102438_030 0.0651848155 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
7 Hb_002903_140 0.0684303141 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
8 Hb_004032_230 0.0717739739 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
9 Hb_000700_060 0.0774000617 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
10 Hb_000264_080 0.0779242487 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
11 Hb_008165_030 0.0784243472 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
12 Hb_000094_090 0.0787318019 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
13 Hb_002282_060 0.0796907591 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
14 Hb_000926_010 0.0804273941 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
15 Hb_002119_090 0.0815487646 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
16 Hb_000069_130 0.0828735085 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
17 Hb_006738_050 0.0829240247 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
18 Hb_007193_110 0.0843040498 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
19 Hb_000809_160 0.0845113981 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
20 Hb_000866_450 0.085280535 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007017_070 Hb_007017_070 Hb_004410_070 Hb_004410_070 Hb_007017_070--Hb_004410_070 Hb_000227_310 Hb_000227_310 Hb_007017_070--Hb_000227_310 Hb_000723_110 Hb_000723_110 Hb_007017_070--Hb_000723_110 Hb_030545_030 Hb_030545_030 Hb_007017_070--Hb_030545_030 Hb_102438_030 Hb_102438_030 Hb_007017_070--Hb_102438_030 Hb_002903_140 Hb_002903_140 Hb_007017_070--Hb_002903_140 Hb_004410_070--Hb_000723_110 Hb_002542_130 Hb_002542_130 Hb_004410_070--Hb_002542_130 Hb_000700_060 Hb_000700_060 Hb_004410_070--Hb_000700_060 Hb_010417_070 Hb_010417_070 Hb_004410_070--Hb_010417_070 Hb_000069_130 Hb_000069_130 Hb_004410_070--Hb_000069_130 Hb_000227_310--Hb_030545_030 Hb_000926_010 Hb_000926_010 Hb_000227_310--Hb_000926_010 Hb_000264_080 Hb_000264_080 Hb_000227_310--Hb_000264_080 Hb_007576_220 Hb_007576_220 Hb_000227_310--Hb_007576_220 Hb_004195_120 Hb_004195_120 Hb_000227_310--Hb_004195_120 Hb_000723_110--Hb_000926_010 Hb_000809_160 Hb_000809_160 Hb_000723_110--Hb_000809_160 Hb_000094_090 Hb_000094_090 Hb_000723_110--Hb_000094_090 Hb_000373_230 Hb_000373_230 Hb_000723_110--Hb_000373_230 Hb_030545_030--Hb_002903_140 Hb_030545_030--Hb_102438_030 Hb_008165_030 Hb_008165_030 Hb_030545_030--Hb_008165_030 Hb_096819_010 Hb_096819_010 Hb_030545_030--Hb_096819_010 Hb_000102_050 Hb_000102_050 Hb_102438_030--Hb_000102_050 Hb_004032_230 Hb_004032_230 Hb_102438_030--Hb_004032_230 Hb_000958_150 Hb_000958_150 Hb_102438_030--Hb_000958_150 Hb_000139_320 Hb_000139_320 Hb_102438_030--Hb_000139_320 Hb_002903_140--Hb_008165_030 Hb_000977_300 Hb_000977_300 Hb_002903_140--Hb_000977_300 Hb_004319_050 Hb_004319_050 Hb_002903_140--Hb_004319_050 Hb_002903_140--Hb_096819_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.00271 14.2025 8.76802 5.16615 6.1551 5.60276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.7019 3.06255 3.18737 4.42335 3.70983

CAGE analysis