Hb_007021_020

Information

Type transcription factor
Description TF Family: B3
Location Contig7021: 10635-14209
Sequence    

Annotation

kegg
ID pop:POPTR_0004s15400g
description hypothetical protein
nr
ID XP_012069205.1
description PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
swissprot
ID Q8L3W1
description B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1
trembl
ID A0A067LCQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10017 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing transcription factor vrn1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54906: 10692-11638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007021_020 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
2 Hb_000362_210 0.0652561467 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
3 Hb_002660_160 0.0685129585 - - protein binding protein, putative [Ricinus communis]
4 Hb_000051_040 0.0689325583 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
5 Hb_183963_020 0.0758170811 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
6 Hb_000212_260 0.0803996634 - - acyl-carrier-protein [Triadica sebifera]
7 Hb_001427_120 0.0862573637 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
8 Hb_001711_030 0.087848527 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
9 Hb_010172_030 0.0879480804 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
10 Hb_009404_020 0.0895103641 - - conserved hypothetical protein [Ricinus communis]
11 Hb_084849_020 0.0909560194 - - ARF GTPase activator, putative [Ricinus communis]
12 Hb_000567_170 0.0917129629 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
13 Hb_007047_010 0.0925340793 - - PREDICTED: expansin-A13 [Jatropha curcas]
14 Hb_000261_460 0.0948636345 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
15 Hb_002326_030 0.0958578374 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
16 Hb_000333_090 0.0984395397 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
17 Hb_000634_050 0.0986999437 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
18 Hb_002781_020 0.0991546482 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
19 Hb_000086_570 0.0996165766 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
20 Hb_000032_220 0.0996279544 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007021_020 Hb_007021_020 Hb_000362_210 Hb_000362_210 Hb_007021_020--Hb_000362_210 Hb_002660_160 Hb_002660_160 Hb_007021_020--Hb_002660_160 Hb_000051_040 Hb_000051_040 Hb_007021_020--Hb_000051_040 Hb_183963_020 Hb_183963_020 Hb_007021_020--Hb_183963_020 Hb_000212_260 Hb_000212_260 Hb_007021_020--Hb_000212_260 Hb_001427_120 Hb_001427_120 Hb_007021_020--Hb_001427_120 Hb_000362_210--Hb_002660_160 Hb_084849_020 Hb_084849_020 Hb_000362_210--Hb_084849_020 Hb_010172_030 Hb_010172_030 Hb_000362_210--Hb_010172_030 Hb_000479_180 Hb_000479_180 Hb_000362_210--Hb_000479_180 Hb_000634_050 Hb_000634_050 Hb_000362_210--Hb_000634_050 Hb_002660_160--Hb_010172_030 Hb_007047_010 Hb_007047_010 Hb_002660_160--Hb_007047_010 Hb_000085_250 Hb_000085_250 Hb_002660_160--Hb_000085_250 Hb_002749_100 Hb_002749_100 Hb_002660_160--Hb_002749_100 Hb_001711_030 Hb_001711_030 Hb_000051_040--Hb_001711_030 Hb_000922_270 Hb_000922_270 Hb_000051_040--Hb_000922_270 Hb_000261_460 Hb_000261_460 Hb_000051_040--Hb_000261_460 Hb_009404_020 Hb_009404_020 Hb_000051_040--Hb_009404_020 Hb_003408_020 Hb_003408_020 Hb_000051_040--Hb_003408_020 Hb_025087_010 Hb_025087_010 Hb_183963_020--Hb_025087_010 Hb_000085_300 Hb_000085_300 Hb_183963_020--Hb_000085_300 Hb_001722_040 Hb_001722_040 Hb_183963_020--Hb_001722_040 Hb_001366_230 Hb_001366_230 Hb_183963_020--Hb_001366_230 Hb_002387_060 Hb_002387_060 Hb_183963_020--Hb_002387_060 Hb_003376_130 Hb_003376_130 Hb_000212_260--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000212_260--Hb_000069_100 Hb_001912_010 Hb_001912_010 Hb_000212_260--Hb_001912_010 Hb_000648_060 Hb_000648_060 Hb_000212_260--Hb_000648_060 Hb_000212_260--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000212_260--Hb_009851_100 Hb_000956_010 Hb_000956_010 Hb_001427_120--Hb_000956_010 Hb_001718_100 Hb_001718_100 Hb_001427_120--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_001427_120--Hb_000086_570 Hb_000376_050 Hb_000376_050 Hb_001427_120--Hb_000376_050 Hb_071736_020 Hb_071736_020 Hb_001427_120--Hb_071736_020 Hb_022250_040 Hb_022250_040 Hb_001427_120--Hb_022250_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.1381 12.1265 9.35539 15.9639 42.5574 79.6288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
141.736 155.332 107.344 25.2797 10.5929

CAGE analysis