Hb_007021_030

Information

Type -
Description -
Location Contig7021: 19456-27157
Sequence    

Annotation

kegg
ID rcu:RCOM_0939380
description hypothetical protein
nr
ID XP_002519146.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZH7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0939380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007021_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005715_020 0.2104351582 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]
3 Hb_004738_050 0.2477213576 - - F-box/leucine rich repeat protein, putative [Ricinus communis]
4 Hb_065395_010 0.2710105176 - - hypothetical protein POPTR_0014s14760g, partial [Populus trichocarpa]
5 Hb_000217_050 0.2992030135 - - elongation factor 1-alpha, putative [Ricinus communis]
6 Hb_004650_090 0.2993923019 - - -
7 Hb_001396_150 0.3069402087 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
8 Hb_000298_080 0.3126305754 - - -
9 Hb_010997_100 0.317700373 transcription factor TF Family: mTERF -
10 Hb_000003_180 0.3276543513 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000014_130 0.3304364808 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
12 Hb_000236_090 0.3335415765 - - hypothetical protein EUGRSUZ_H00030 [Eucalyptus grandis]
13 Hb_126838_020 0.3397579556 - - JHL22C18.7 [Jatropha curcas]
14 Hb_018118_020 0.3457128024 - - unnamed protein product [Vitis vinifera]
15 Hb_002141_040 0.3509416705 - - -
16 Hb_177132_010 0.3529591551 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_002194_070 0.3533788719 - - -
18 Hb_155256_020 0.3548337523 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
19 Hb_164370_010 0.35484301 - - -
20 Hb_094647_010 0.3558628148 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Jatropha curcas]

Gene co-expression network

sample Hb_007021_030 Hb_007021_030 Hb_005715_020 Hb_005715_020 Hb_007021_030--Hb_005715_020 Hb_004738_050 Hb_004738_050 Hb_007021_030--Hb_004738_050 Hb_065395_010 Hb_065395_010 Hb_007021_030--Hb_065395_010 Hb_000217_050 Hb_000217_050 Hb_007021_030--Hb_000217_050 Hb_004650_090 Hb_004650_090 Hb_007021_030--Hb_004650_090 Hb_001396_150 Hb_001396_150 Hb_007021_030--Hb_001396_150 Hb_018118_020 Hb_018118_020 Hb_005715_020--Hb_018118_020 Hb_010997_100 Hb_010997_100 Hb_005715_020--Hb_010997_100 Hb_005715_020--Hb_004650_090 Hb_097433_020 Hb_097433_020 Hb_005715_020--Hb_097433_020 Hb_005715_020--Hb_001396_150 Hb_007348_040 Hb_007348_040 Hb_004738_050--Hb_007348_040 Hb_001846_050 Hb_001846_050 Hb_004738_050--Hb_001846_050 Hb_000445_080 Hb_000445_080 Hb_004738_050--Hb_000445_080 Hb_094647_010 Hb_094647_010 Hb_004738_050--Hb_094647_010 Hb_007827_020 Hb_007827_020 Hb_004738_050--Hb_007827_020 Hb_065395_010--Hb_000217_050 Hb_065395_010--Hb_005715_020 Hb_074701_010 Hb_074701_010 Hb_065395_010--Hb_074701_010 Hb_138652_020 Hb_138652_020 Hb_065395_010--Hb_138652_020 Hb_057746_010 Hb_057746_010 Hb_065395_010--Hb_057746_010 Hb_000217_050--Hb_094647_010 Hb_087762_010 Hb_087762_010 Hb_000217_050--Hb_087762_010 Hb_000939_010 Hb_000939_010 Hb_000217_050--Hb_000939_010 Hb_000270_500 Hb_000270_500 Hb_000217_050--Hb_000270_500 Hb_000193_150 Hb_000193_150 Hb_000217_050--Hb_000193_150 Hb_000580_040 Hb_000580_040 Hb_004650_090--Hb_000580_040 Hb_000062_500 Hb_000062_500 Hb_004650_090--Hb_000062_500 Hb_007545_160 Hb_007545_160 Hb_004650_090--Hb_007545_160 Hb_043950_010 Hb_043950_010 Hb_004650_090--Hb_043950_010 Hb_173423_010 Hb_173423_010 Hb_004650_090--Hb_173423_010 Hb_157846_010 Hb_157846_010 Hb_001396_150--Hb_157846_010 Hb_002235_140 Hb_002235_140 Hb_001396_150--Hb_002235_140 Hb_000217_060 Hb_000217_060 Hb_001396_150--Hb_000217_060 Hb_000375_370 Hb_000375_370 Hb_001396_150--Hb_000375_370 Hb_049160_010 Hb_049160_010 Hb_001396_150--Hb_049160_010 Hb_114261_010 Hb_114261_010 Hb_001396_150--Hb_114261_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.055894 0.109316 0.0111531 0 0.0140241 0.293202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0341373 0 0 0.0107316 0.0559937

CAGE analysis