Hb_007023_030

Information

Type -
Description -
Location Contig7023: 65839-72047
Sequence    

Annotation

kegg
ID rcu:RCOM_1175320
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012088294.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9SKU6
description Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1
trembl
ID A0A067JJQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25794 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54910: 70560-70860 , PASA_asmbl_54911: 71769-71953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007023_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
2 Hb_002768_060 0.0840632258 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
3 Hb_004480_100 0.0860441403 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
4 Hb_000789_200 0.0899808405 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
5 Hb_000656_010 0.0912198841 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
6 Hb_003467_030 0.0917460441 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
7 Hb_001876_010 0.093881166 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
8 Hb_002908_050 0.0949406109 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
9 Hb_098315_080 0.095136031 - - methylmalonate-semialdehyde dehydrogenase, putative [Ricinus communis]
10 Hb_000028_390 0.0977458221 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
11 Hb_002965_090 0.0984647222 - - importin alpha, putative [Ricinus communis]
12 Hb_002338_050 0.098533396 - - PREDICTED: uncharacterized protein LOC105118489 isoform X1 [Populus euphratica]
13 Hb_000095_080 0.1028034742 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
14 Hb_019616_020 0.1039842037 - - PREDICTED: alanine--tRNA ligase [Jatropha curcas]
15 Hb_000069_210 0.1048106549 - - PREDICTED: exportin-2 [Jatropha curcas]
16 Hb_000053_060 0.1051841837 - - hypothetical protein VITISV_022618 [Vitis vinifera]
17 Hb_001357_020 0.1052239269 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
18 Hb_003544_160 0.1055345902 - - -
19 Hb_000053_040 0.1058648247 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
20 Hb_002600_150 0.1093785877 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007023_030 Hb_007023_030 Hb_002768_060 Hb_002768_060 Hb_007023_030--Hb_002768_060 Hb_004480_100 Hb_004480_100 Hb_007023_030--Hb_004480_100 Hb_000789_200 Hb_000789_200 Hb_007023_030--Hb_000789_200 Hb_000656_010 Hb_000656_010 Hb_007023_030--Hb_000656_010 Hb_003467_030 Hb_003467_030 Hb_007023_030--Hb_003467_030 Hb_001876_010 Hb_001876_010 Hb_007023_030--Hb_001876_010 Hb_002768_060--Hb_001876_010 Hb_002768_060--Hb_004480_100 Hb_003544_160 Hb_003544_160 Hb_002768_060--Hb_003544_160 Hb_002768_060--Hb_000789_200 Hb_002908_050 Hb_002908_050 Hb_002768_060--Hb_002908_050 Hb_004679_030 Hb_004679_030 Hb_002768_060--Hb_004679_030 Hb_004480_100--Hb_000789_200 Hb_004480_100--Hb_002908_050 Hb_001789_150 Hb_001789_150 Hb_004480_100--Hb_001789_150 Hb_004480_100--Hb_001876_010 Hb_001951_220 Hb_001951_220 Hb_004480_100--Hb_001951_220 Hb_027073_020 Hb_027073_020 Hb_000789_200--Hb_027073_020 Hb_000789_200--Hb_000656_010 Hb_000720_050 Hb_000720_050 Hb_000789_200--Hb_000720_050 Hb_001789_110 Hb_001789_110 Hb_000789_200--Hb_001789_110 Hb_000656_010--Hb_001876_010 Hb_001629_030 Hb_001629_030 Hb_000656_010--Hb_001629_030 Hb_005976_080 Hb_005976_080 Hb_000656_010--Hb_005976_080 Hb_000189_550 Hb_000189_550 Hb_000656_010--Hb_000189_550 Hb_013726_090 Hb_013726_090 Hb_000656_010--Hb_013726_090 Hb_003467_030--Hb_002768_060 Hb_000204_120 Hb_000204_120 Hb_003467_030--Hb_000204_120 Hb_001435_030 Hb_001435_030 Hb_003467_030--Hb_001435_030 Hb_003994_110 Hb_003994_110 Hb_003467_030--Hb_003994_110 Hb_011386_020 Hb_011386_020 Hb_003467_030--Hb_011386_020 Hb_000011_060 Hb_000011_060 Hb_001876_010--Hb_000011_060 Hb_001876_010--Hb_002908_050 Hb_001876_010--Hb_000189_550 Hb_000069_210 Hb_000069_210 Hb_001876_010--Hb_000069_210 Hb_000028_390 Hb_000028_390 Hb_001876_010--Hb_000028_390 Hb_000984_170 Hb_000984_170 Hb_001876_010--Hb_000984_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.35058 3.19446 2.00428 5.61359 3.05422 6.12839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.53635 4.17138 5.72405 8.95655 10.1024

CAGE analysis