Hb_007026_030

Information

Type -
Description -
Location Contig7026: 36212-46396
Sequence    

Annotation

kegg
ID rcu:RCOM_0239260
description rubisco subunit binding-protein alpha subunit, ruba, putative
nr
ID XP_002528171.1
description rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
swissprot
ID Q56XV8
description Chaperonin 60 subunit alpha 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60A2 PE=2 SV=1
trembl
ID B9SQA2
description Rubisco subunit binding-protein alpha subunit, ruba, putative OS=Ricinus communis GN=RCOM_0239260 PE=3 SV=1
Gene Ontology
ID GO:0005737
description chaperonin 60 subunit alpha chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54912: 36184-36888 , PASA_asmbl_54913: 37749-46623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007026_030 0.0 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
2 Hb_000794_050 0.0670196779 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
3 Hb_178968_100 0.0695034813 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
4 Hb_003044_100 0.0739144396 - - hypothetical protein F383_08446 [Gossypium arboreum]
5 Hb_001575_100 0.0742337644 - - PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial [Jatropha curcas]
6 Hb_000368_020 0.0745694905 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
7 Hb_012098_110 0.0749911054 - - Ribonuclease 3 [Gossypium arboreum]
8 Hb_006064_010 0.0768580729 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
9 Hb_000367_130 0.0775919274 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000207_310 0.0782919754 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
11 Hb_000498_010 0.0787091511 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_009265_080 0.0792517813 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
13 Hb_003467_010 0.0799186708 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
14 Hb_135377_010 0.0809750073 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
15 Hb_000093_080 0.0836966636 - - hypothetical protein POPTR_0008s09730g [Populus trichocarpa]
16 Hb_022693_120 0.0840436017 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
17 Hb_008253_010 0.084509271 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
18 Hb_000913_050 0.0855517764 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
19 Hb_007262_020 0.0861346192 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
20 Hb_001983_030 0.0865433501 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007026_030 Hb_007026_030 Hb_000794_050 Hb_000794_050 Hb_007026_030--Hb_000794_050 Hb_178968_100 Hb_178968_100 Hb_007026_030--Hb_178968_100 Hb_003044_100 Hb_003044_100 Hb_007026_030--Hb_003044_100 Hb_001575_100 Hb_001575_100 Hb_007026_030--Hb_001575_100 Hb_000368_020 Hb_000368_020 Hb_007026_030--Hb_000368_020 Hb_012098_110 Hb_012098_110 Hb_007026_030--Hb_012098_110 Hb_000794_050--Hb_000368_020 Hb_000926_190 Hb_000926_190 Hb_000794_050--Hb_000926_190 Hb_033720_010 Hb_033720_010 Hb_000794_050--Hb_033720_010 Hb_001390_110 Hb_001390_110 Hb_000794_050--Hb_001390_110 Hb_000853_230 Hb_000853_230 Hb_000794_050--Hb_000853_230 Hb_006620_020 Hb_006620_020 Hb_000794_050--Hb_006620_020 Hb_004450_060 Hb_004450_060 Hb_178968_100--Hb_004450_060 Hb_000088_200 Hb_000088_200 Hb_178968_100--Hb_000088_200 Hb_000808_250 Hb_000808_250 Hb_178968_100--Hb_000808_250 Hb_003467_010 Hb_003467_010 Hb_178968_100--Hb_003467_010 Hb_006623_020 Hb_006623_020 Hb_178968_100--Hb_006623_020 Hb_031939_010 Hb_031939_010 Hb_003044_100--Hb_031939_010 Hb_000012_020 Hb_000012_020 Hb_003044_100--Hb_000012_020 Hb_000290_020 Hb_000290_020 Hb_003044_100--Hb_000290_020 Hb_004198_010 Hb_004198_010 Hb_003044_100--Hb_004198_010 Hb_006064_010 Hb_006064_010 Hb_003044_100--Hb_006064_010 Hb_001575_100--Hb_178968_100 Hb_001014_050 Hb_001014_050 Hb_001575_100--Hb_001014_050 Hb_008055_040 Hb_008055_040 Hb_001575_100--Hb_008055_040 Hb_000365_120 Hb_000365_120 Hb_001575_100--Hb_000365_120 Hb_010661_030 Hb_010661_030 Hb_001575_100--Hb_010661_030 Hb_000368_020--Hb_003467_010 Hb_006960_050 Hb_006960_050 Hb_000368_020--Hb_006960_050 Hb_106552_050 Hb_106552_050 Hb_000368_020--Hb_106552_050 Hb_000926_310 Hb_000926_310 Hb_000368_020--Hb_000926_310 Hb_006824_060 Hb_006824_060 Hb_000368_020--Hb_006824_060 Hb_007262_020 Hb_007262_020 Hb_012098_110--Hb_007262_020 Hb_007904_120 Hb_007904_120 Hb_012098_110--Hb_007904_120 Hb_010381_060 Hb_010381_060 Hb_012098_110--Hb_010381_060 Hb_000714_050 Hb_000714_050 Hb_012098_110--Hb_000714_050 Hb_000498_010 Hb_000498_010 Hb_012098_110--Hb_000498_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0511 7.01113 9.66032 4.35443 14.5765 18.4941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.56847 10.0184 7.23144 6.85445 7.60274

CAGE analysis