Hb_007026_040

Information

Type -
Description -
Location Contig7026: 81324-81808
Sequence    

Annotation

kegg
ID egr:104442451
description chaperonin 60 subunit alpha 2, chloroplastic-like
nr
ID XP_010054191.1
description PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A078H2W4
description BnaC03g46980D protein OS=Brassica napus GN=BnaC03g46980D PE=3 SV=1
Gene Ontology
ID GO:0000166
description chaperonin 60 subunit alpha chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54914: 81399-81821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007026_040 0.0 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
2 Hb_162603_010 0.0807472437 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_103760_010 0.087640421 - - serine/arginine rich splicing factor, putative [Ricinus communis]
4 Hb_000236_310 0.0948258425 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
5 Hb_002600_140 0.0980658127 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
6 Hb_032050_040 0.0984748262 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
7 Hb_000718_080 0.1001363909 - - hypothetical protein PRUPE_ppa005259mg [Prunus persica]
8 Hb_003010_020 0.1020278113 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_004732_020 0.1026606723 - - PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1 [Populus euphratica]
10 Hb_000083_160 0.1031308698 - - Cell division cycle protein, putative [Ricinus communis]
11 Hb_000127_040 0.10791651 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
12 Hb_000990_090 0.1097391389 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
13 Hb_115107_010 0.1102767061 - - Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]
14 Hb_011716_020 0.1112725398 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
15 Hb_001416_070 0.1129216796 - - oxidoreductase, putative [Ricinus communis]
16 Hb_002400_330 0.113246369 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
17 Hb_099878_030 0.1134219585 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
18 Hb_007803_050 0.1141583523 - - PREDICTED: uncharacterized protein LOC105129170 isoform X2 [Populus euphratica]
19 Hb_000038_080 0.1142558685 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
20 Hb_000271_090 0.1156395824 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007026_040 Hb_007026_040 Hb_162603_010 Hb_162603_010 Hb_007026_040--Hb_162603_010 Hb_103760_010 Hb_103760_010 Hb_007026_040--Hb_103760_010 Hb_000236_310 Hb_000236_310 Hb_007026_040--Hb_000236_310 Hb_002600_140 Hb_002600_140 Hb_007026_040--Hb_002600_140 Hb_032050_040 Hb_032050_040 Hb_007026_040--Hb_032050_040 Hb_000718_080 Hb_000718_080 Hb_007026_040--Hb_000718_080 Hb_000429_150 Hb_000429_150 Hb_162603_010--Hb_000429_150 Hb_099878_030 Hb_099878_030 Hb_162603_010--Hb_099878_030 Hb_162603_010--Hb_000236_310 Hb_000830_030 Hb_000830_030 Hb_162603_010--Hb_000830_030 Hb_000140_280 Hb_000140_280 Hb_162603_010--Hb_000140_280 Hb_000083_160 Hb_000083_160 Hb_103760_010--Hb_000083_160 Hb_001488_410 Hb_001488_410 Hb_103760_010--Hb_001488_410 Hb_003010_020 Hb_003010_020 Hb_103760_010--Hb_003010_020 Hb_000208_210 Hb_000208_210 Hb_103760_010--Hb_000208_210 Hb_001617_060 Hb_001617_060 Hb_103760_010--Hb_001617_060 Hb_005228_130 Hb_005228_130 Hb_000236_310--Hb_005228_130 Hb_001449_040 Hb_001449_040 Hb_000236_310--Hb_001449_040 Hb_000613_050 Hb_000613_050 Hb_000236_310--Hb_000613_050 Hb_011716_020 Hb_011716_020 Hb_000236_310--Hb_011716_020 Hb_000127_040 Hb_000127_040 Hb_000236_310--Hb_000127_040 Hb_000236_310--Hb_002600_140 Hb_002600_140--Hb_011716_020 Hb_002974_060 Hb_002974_060 Hb_002600_140--Hb_002974_060 Hb_002600_140--Hb_005228_130 Hb_007805_010 Hb_007805_010 Hb_002600_140--Hb_007805_010 Hb_007919_100 Hb_007919_100 Hb_032050_040--Hb_007919_100 Hb_032050_040--Hb_003010_020 Hb_152202_010 Hb_152202_010 Hb_032050_040--Hb_152202_010 Hb_002273_120 Hb_002273_120 Hb_032050_040--Hb_002273_120 Hb_002785_050 Hb_002785_050 Hb_032050_040--Hb_002785_050 Hb_032050_040--Hb_000127_040 Hb_000784_070 Hb_000784_070 Hb_000718_080--Hb_000784_070 Hb_000718_080--Hb_032050_040 Hb_012322_010 Hb_012322_010 Hb_000718_080--Hb_012322_010 Hb_000718_080--Hb_000429_150 Hb_000718_080--Hb_000830_030 Hb_000718_080--Hb_152202_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.85754 2.49525 2.19318 5.34373 3.83004 10.0975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.9467 2.46884 2.97035 4.55546 3.26258

CAGE analysis