Hb_007027_010

Information

Type -
Description -
Location Contig7027: 17634-18182
Sequence    

Annotation

kegg
ID rcu:RCOM_1247640
description RING-H2 finger protein ATL2J, putative
nr
ID XP_002527730.1
description RING-H2 finger protein ATL2J, putative [Ricinus communis]
swissprot
ID O80927
description RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2 SV=2
trembl
ID B9SP11
description RING-H2 finger protein ATL2J, putative OS=Ricinus communis GN=RCOM_1247640 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl33-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54915: 17519-18155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007027_010 0.0 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
2 Hb_000979_160 0.1263510012 - - hypothetical protein RCOM_0629030 [Ricinus communis]
3 Hb_004462_030 0.1264346912 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
4 Hb_001728_130 0.1466796631 - - alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_073808_010 0.1589095375 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
6 Hb_000959_120 0.1603349617 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
7 Hb_000540_040 0.1650939697 - - PREDICTED: chitinase 2 [Amborella trichopoda]
8 Hb_001247_270 0.1658910031 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
9 Hb_001976_020 0.1670927043 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000095_070 0.1679920213 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000325_010 0.1698897447 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
12 Hb_016564_060 0.1736915555 - - PREDICTED: uncharacterized protein LOC105628249 [Jatropha curcas]
13 Hb_005054_170 0.1749501345 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
14 Hb_034507_010 0.1759346982 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
15 Hb_135720_010 0.1780215671 - - hypothetical protein JCGZ_17857 [Jatropha curcas]
16 Hb_000692_230 0.1787643326 - - phospholipase d delta, putative [Ricinus communis]
17 Hb_002097_080 0.1794248129 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
18 Hb_000028_580 0.1797249139 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
19 Hb_002324_040 0.1807140815 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
20 Hb_000028_340 0.1844985272 - - PREDICTED: potassium channel SKOR-like [Prunus mume]

Gene co-expression network

sample Hb_007027_010 Hb_007027_010 Hb_000979_160 Hb_000979_160 Hb_007027_010--Hb_000979_160 Hb_004462_030 Hb_004462_030 Hb_007027_010--Hb_004462_030 Hb_001728_130 Hb_001728_130 Hb_007027_010--Hb_001728_130 Hb_073808_010 Hb_073808_010 Hb_007027_010--Hb_073808_010 Hb_000959_120 Hb_000959_120 Hb_007027_010--Hb_000959_120 Hb_000540_040 Hb_000540_040 Hb_007027_010--Hb_000540_040 Hb_001976_020 Hb_001976_020 Hb_000979_160--Hb_001976_020 Hb_000979_160--Hb_000959_120 Hb_002097_080 Hb_002097_080 Hb_000979_160--Hb_002097_080 Hb_001247_270 Hb_001247_270 Hb_000979_160--Hb_001247_270 Hb_003006_080 Hb_003006_080 Hb_000979_160--Hb_003006_080 Hb_000095_070 Hb_000095_070 Hb_004462_030--Hb_000095_070 Hb_004462_030--Hb_000959_120 Hb_060198_010 Hb_060198_010 Hb_004462_030--Hb_060198_010 Hb_001143_140 Hb_001143_140 Hb_004462_030--Hb_001143_140 Hb_004462_030--Hb_000979_160 Hb_001728_130--Hb_000095_070 Hb_014361_040 Hb_014361_040 Hb_001728_130--Hb_014361_040 Hb_135720_010 Hb_135720_010 Hb_001728_130--Hb_135720_010 Hb_005545_110 Hb_005545_110 Hb_001728_130--Hb_005545_110 Hb_164117_010 Hb_164117_010 Hb_001728_130--Hb_164117_010 Hb_001728_130--Hb_073808_010 Hb_001189_100 Hb_001189_100 Hb_073808_010--Hb_001189_100 Hb_002671_060 Hb_002671_060 Hb_073808_010--Hb_002671_060 Hb_000085_380 Hb_000085_380 Hb_073808_010--Hb_000085_380 Hb_073808_010--Hb_001247_270 Hb_042202_020 Hb_042202_020 Hb_073808_010--Hb_042202_020 Hb_000959_120--Hb_000095_070 Hb_000959_120--Hb_001247_270 Hb_000959_120--Hb_001728_130 Hb_000959_120--Hb_001976_020 Hb_000020_030 Hb_000020_030 Hb_000540_040--Hb_000020_030 Hb_000181_210 Hb_000181_210 Hb_000540_040--Hb_000181_210 Hb_025432_010 Hb_025432_010 Hb_000540_040--Hb_025432_010 Hb_026549_050 Hb_026549_050 Hb_000540_040--Hb_026549_050 Hb_002324_040 Hb_002324_040 Hb_000540_040--Hb_002324_040 Hb_012727_010 Hb_012727_010 Hb_000540_040--Hb_012727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29493 24.1006 4.89132 42.1777 1.68168 0.251187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.577929 0.454117 4.22832 16.3725 17.3073

CAGE analysis