Hb_007035_050

Information

Type -
Description -
Location Contig7035: 68911-76516
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05270g
description POPTRDRAFT_823289; hydroxyproline-rich glycoprotein
nr
ID XP_012093010.1
description PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
swissprot
ID Q9M9G6
description Cleavage stimulating factor 64 OS=Arabidopsis thaliana GN=CSTF64 PE=1 SV=1
trembl
ID A0A067JKW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05893 PE=4 SV=1
Gene Ontology
ID GO:0000398
description cleavage stimulating factor 64

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54987: 68802-76427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007035_050 0.0 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
2 Hb_000340_400 0.0653396427 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
3 Hb_005116_060 0.0713520393 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
4 Hb_001396_200 0.0745069042 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
5 Hb_000318_250 0.0759022449 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
6 Hb_000886_050 0.0772293306 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
7 Hb_007765_110 0.0779251705 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
8 Hb_001723_020 0.078809158 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
9 Hb_000705_170 0.0793432249 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
10 Hb_000868_090 0.0809343775 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
11 Hb_006478_040 0.0811812029 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
12 Hb_007590_020 0.0836004887 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
13 Hb_001546_080 0.0851124157 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
14 Hb_003030_060 0.0871946034 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
15 Hb_008959_020 0.0878268592 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
16 Hb_002007_150 0.0891166285 - - -
17 Hb_003464_090 0.0892154132 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
18 Hb_001221_110 0.0895763449 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
19 Hb_003849_110 0.0898207606 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
20 Hb_004837_180 0.0898406994 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007035_050 Hb_007035_050 Hb_000340_400 Hb_000340_400 Hb_007035_050--Hb_000340_400 Hb_005116_060 Hb_005116_060 Hb_007035_050--Hb_005116_060 Hb_001396_200 Hb_001396_200 Hb_007035_050--Hb_001396_200 Hb_000318_250 Hb_000318_250 Hb_007035_050--Hb_000318_250 Hb_000886_050 Hb_000886_050 Hb_007035_050--Hb_000886_050 Hb_007765_110 Hb_007765_110 Hb_007035_050--Hb_007765_110 Hb_004837_180 Hb_004837_180 Hb_000340_400--Hb_004837_180 Hb_000340_400--Hb_005116_060 Hb_003001_080 Hb_003001_080 Hb_000340_400--Hb_003001_080 Hb_006478_040 Hb_006478_040 Hb_000340_400--Hb_006478_040 Hb_001359_050 Hb_001359_050 Hb_000340_400--Hb_001359_050 Hb_095296_010 Hb_095296_010 Hb_005116_060--Hb_095296_010 Hb_005116_060--Hb_006478_040 Hb_001030_020 Hb_001030_020 Hb_005116_060--Hb_001030_020 Hb_005116_060--Hb_003001_080 Hb_000868_090 Hb_000868_090 Hb_001396_200--Hb_000868_090 Hb_000130_410 Hb_000130_410 Hb_001396_200--Hb_000130_410 Hb_008959_020 Hb_008959_020 Hb_001396_200--Hb_008959_020 Hb_001114_140 Hb_001114_140 Hb_001396_200--Hb_001114_140 Hb_001396_200--Hb_007765_110 Hb_001546_080 Hb_001546_080 Hb_000318_250--Hb_001546_080 Hb_000318_250--Hb_000130_410 Hb_000318_250--Hb_000868_090 Hb_000732_010 Hb_000732_010 Hb_000318_250--Hb_000732_010 Hb_000317_050 Hb_000317_050 Hb_000318_250--Hb_000317_050 Hb_000329_710 Hb_000329_710 Hb_000318_250--Hb_000329_710 Hb_002078_220 Hb_002078_220 Hb_000886_050--Hb_002078_220 Hb_000861_080 Hb_000861_080 Hb_000886_050--Hb_000861_080 Hb_002890_290 Hb_002890_290 Hb_000886_050--Hb_002890_290 Hb_003464_090 Hb_003464_090 Hb_000886_050--Hb_003464_090 Hb_000076_160 Hb_000076_160 Hb_000886_050--Hb_000076_160 Hb_005653_090 Hb_005653_090 Hb_000886_050--Hb_005653_090 Hb_007765_110--Hb_003464_090 Hb_007163_120 Hb_007163_120 Hb_007765_110--Hb_007163_120 Hb_007765_110--Hb_000868_090 Hb_033772_030 Hb_033772_030 Hb_007765_110--Hb_033772_030 Hb_003370_030 Hb_003370_030 Hb_007765_110--Hb_003370_030 Hb_011491_010 Hb_011491_010 Hb_007765_110--Hb_011491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.10186 18.0492 9.8957 10.3373 10.5711 7.70256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5451 12.8761 7.12568 9.23265 9.73674

CAGE analysis