Hb_007037_010

Information

Type -
Description -
Location Contig7037: 24855-31686
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03160g
description POPTRDRAFT_820232; hypothetical protein
nr
ID XP_012090528.1
description PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
swissprot
ID O48902
description Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1
trembl
ID A0A067L9D8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01576 PE=3 SV=1
Gene Ontology
ID GO:0044424
description malate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007037_010 0.0 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
2 Hb_185058_020 0.1774204171 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
3 Hb_158144_020 0.1786907357 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
4 Hb_001811_080 0.1998256454 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
5 Hb_002783_070 0.20067634 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
6 Hb_021313_010 0.2069293988 - - hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
7 Hb_000529_140 0.2123912524 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000890_110 0.2124454103 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
9 Hb_168031_020 0.212949747 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
10 Hb_000172_620 0.2145303724 - - hypothetical protein VITISV_033646 [Vitis vinifera]
11 Hb_021409_190 0.2165968323 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
12 Hb_007002_010 0.2170345375 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
13 Hb_001365_010 0.2170882393 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
14 Hb_000329_080 0.221036331 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
15 Hb_000038_020 0.2244215989 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
16 Hb_062013_010 0.2244954039 - - phosphoprotein phosphatase, putative [Ricinus communis]
17 Hb_002960_040 0.228102196 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
18 Hb_000616_030 0.2298857679 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
19 Hb_041813_050 0.2307258989 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
20 Hb_000058_080 0.2313003481 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_007037_010 Hb_007037_010 Hb_185058_020 Hb_185058_020 Hb_007037_010--Hb_185058_020 Hb_158144_020 Hb_158144_020 Hb_007037_010--Hb_158144_020 Hb_001811_080 Hb_001811_080 Hb_007037_010--Hb_001811_080 Hb_002783_070 Hb_002783_070 Hb_007037_010--Hb_002783_070 Hb_021313_010 Hb_021313_010 Hb_007037_010--Hb_021313_010 Hb_000529_140 Hb_000529_140 Hb_007037_010--Hb_000529_140 Hb_009848_050 Hb_009848_050 Hb_185058_020--Hb_009848_050 Hb_001085_210 Hb_001085_210 Hb_185058_020--Hb_001085_210 Hb_041813_050 Hb_041813_050 Hb_185058_020--Hb_041813_050 Hb_009848_060 Hb_009848_060 Hb_185058_020--Hb_009848_060 Hb_069147_010 Hb_069147_010 Hb_185058_020--Hb_069147_010 Hb_000058_080 Hb_000058_080 Hb_158144_020--Hb_000058_080 Hb_000890_110 Hb_000890_110 Hb_158144_020--Hb_000890_110 Hb_000189_250 Hb_000189_250 Hb_158144_020--Hb_000189_250 Hb_000640_260 Hb_000640_260 Hb_158144_020--Hb_000640_260 Hb_000402_170 Hb_000402_170 Hb_158144_020--Hb_000402_170 Hb_166127_030 Hb_166127_030 Hb_158144_020--Hb_166127_030 Hb_000329_080 Hb_000329_080 Hb_001811_080--Hb_000329_080 Hb_002811_190 Hb_002811_190 Hb_001811_080--Hb_002811_190 Hb_000163_110 Hb_000163_110 Hb_001811_080--Hb_000163_110 Hb_000963_090 Hb_000963_090 Hb_001811_080--Hb_000963_090 Hb_000977_150 Hb_000977_150 Hb_001811_080--Hb_000977_150 Hb_001365_010 Hb_001365_010 Hb_001811_080--Hb_001365_010 Hb_002960_040 Hb_002960_040 Hb_002783_070--Hb_002960_040 Hb_021409_190 Hb_021409_190 Hb_002783_070--Hb_021409_190 Hb_010984_010 Hb_010984_010 Hb_002783_070--Hb_010984_010 Hb_000803_240 Hb_000803_240 Hb_002783_070--Hb_000803_240 Hb_000803_220 Hb_000803_220 Hb_002783_070--Hb_000803_220 Hb_008616_040 Hb_008616_040 Hb_002783_070--Hb_008616_040 Hb_021313_010--Hb_000890_110 Hb_021313_010--Hb_158144_020 Hb_000035_020 Hb_000035_020 Hb_021313_010--Hb_000035_020 Hb_021313_010--Hb_000058_080 Hb_000683_080 Hb_000683_080 Hb_021313_010--Hb_000683_080 Hb_000390_030 Hb_000390_030 Hb_021313_010--Hb_000390_030 Hb_008511_140 Hb_008511_140 Hb_000529_140--Hb_008511_140 Hb_000529_140--Hb_000390_030 Hb_005523_010 Hb_005523_010 Hb_000529_140--Hb_005523_010 Hb_010757_030 Hb_010757_030 Hb_000529_140--Hb_010757_030 Hb_000495_080 Hb_000495_080 Hb_000529_140--Hb_000495_080 Hb_000529_140--Hb_000640_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0245408 0.0365925 0.400689 0.307737 0.245296 0.129072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.027928 0.0219728 0.289999 0.578136 2.1227

CAGE analysis