Hb_007037_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig7037: 31919-35773
Sequence    

Annotation

kegg
ID rcu:RCOM_0351150
description hypothetical protein
nr
ID XP_012090539.1
description PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
swissprot
ID Q84K00
description NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2
trembl
ID R4NHQ2
description NAC transcription factor 044 OS=Jatropha curcas GN=JCGZ_01577 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 78

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54989: 31990-35768
cDNA
(Sanger)
(ID:Location)		 023_G02.ab1: 34722-35768 , 030_A15.ab1: 34463-35598

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007037_020 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
2 Hb_011021_040 0.0574358467 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
3 Hb_013405_140 0.0690643723 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
4 Hb_001172_120 0.0765670434 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
5 Hb_013399_050 0.0782910688 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
6 Hb_002016_080 0.0805832096 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
7 Hb_011485_020 0.0830587658 - - protein with unknown function [Ricinus communis]
8 Hb_000424_200 0.0837322401 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
9 Hb_003783_030 0.0852936395 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
10 Hb_000673_020 0.0880115455 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
11 Hb_000327_060 0.0887874294 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
12 Hb_003880_030 0.0909708791 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
13 Hb_000111_450 0.0991023434 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
14 Hb_000436_030 0.0993243397 - - conserved hypothetical protein [Ricinus communis]
15 Hb_158445_010 0.1005274648 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
16 Hb_002284_200 0.1010833121 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
17 Hb_001979_020 0.1023365285 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
18 Hb_003020_150 0.1039918854 - - tropinone reductase, putative [Ricinus communis]
19 Hb_011381_080 0.1067512664 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
20 Hb_006256_030 0.1073427246 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]

Gene co-expression network

sample Hb_007037_020 Hb_007037_020 Hb_011021_040 Hb_011021_040 Hb_007037_020--Hb_011021_040 Hb_013405_140 Hb_013405_140 Hb_007037_020--Hb_013405_140 Hb_001172_120 Hb_001172_120 Hb_007037_020--Hb_001172_120 Hb_013399_050 Hb_013399_050 Hb_007037_020--Hb_013399_050 Hb_002016_080 Hb_002016_080 Hb_007037_020--Hb_002016_080 Hb_011485_020 Hb_011485_020 Hb_007037_020--Hb_011485_020 Hb_011021_040--Hb_013399_050 Hb_011021_040--Hb_013405_140 Hb_000175_030 Hb_000175_030 Hb_011021_040--Hb_000175_030 Hb_011021_040--Hb_002016_080 Hb_011021_040--Hb_001172_120 Hb_013405_140--Hb_002016_080 Hb_013405_140--Hb_011485_020 Hb_000673_020 Hb_000673_020 Hb_013405_140--Hb_000673_020 Hb_003783_030 Hb_003783_030 Hb_013405_140--Hb_003783_030 Hb_000069_700 Hb_000069_700 Hb_001172_120--Hb_000069_700 Hb_007192_100 Hb_007192_100 Hb_001172_120--Hb_007192_100 Hb_000115_230 Hb_000115_230 Hb_001172_120--Hb_000115_230 Hb_001235_110 Hb_001235_110 Hb_001172_120--Hb_001235_110 Hb_000424_200 Hb_000424_200 Hb_013399_050--Hb_000424_200 Hb_013399_050--Hb_013405_140 Hb_000327_060 Hb_000327_060 Hb_013399_050--Hb_000327_060 Hb_158445_010 Hb_158445_010 Hb_013399_050--Hb_158445_010 Hb_002016_080--Hb_011485_020 Hb_000922_040 Hb_000922_040 Hb_002016_080--Hb_000922_040 Hb_002016_080--Hb_000673_020 Hb_000413_280 Hb_000413_280 Hb_002016_080--Hb_000413_280 Hb_002016_080--Hb_003783_030 Hb_000436_030 Hb_000436_030 Hb_011485_020--Hb_000436_030 Hb_000479_160 Hb_000479_160 Hb_011485_020--Hb_000479_160 Hb_001053_140 Hb_001053_140 Hb_011485_020--Hb_001053_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9448 31.5626 44.5005 42.6028 20.9129 22.3744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.0979 138.18 104.36 41.6183 50.4253

CAGE analysis