Hb_007040_010

Information

Type -
Description -
Location Contig7040: 25605-26003
Sequence    

Annotation

kegg
ID tcc:TCM_024356
description hypothetical protein
nr
ID XP_007028514.1
description Uncharacterized protein TCM_024356 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EW29
description Uncharacterized protein OS=Theobroma cacao GN=TCM_024356 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007040_010 0.0 - - Uncharacterized protein TCM_024356 [Theobroma cacao]
2 Hb_000752_080 0.1458237986 - - -
3 Hb_008758_010 0.1745847634 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_004010_020 0.2331356057 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
5 Hb_000059_120 0.2619248361 - - JHL22C18.10 [Jatropha curcas]
6 Hb_012184_030 0.2647073074 - - -
7 Hb_008206_070 0.2678630584 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
8 Hb_017604_030 0.2873610721 - - -
9 Hb_012807_090 0.3235879952 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
10 Hb_004951_050 0.3239750746 - - conserved hypothetical protein [Ricinus communis]
11 Hb_014929_010 0.3242236967 - - -
12 Hb_000143_070 0.3249031283 - - -
13 Hb_000300_460 0.3255919416 - - Mavicyanin, putative [Ricinus communis]
14 Hb_003279_010 0.3259665698 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
15 Hb_121954_010 0.3259992731 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
16 Hb_074822_010 0.3260086582 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
17 Hb_005379_010 0.3262279787 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_000646_030 0.3262955067 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_025662_020 0.3262997442 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_003797_030 0.3263172431 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_007040_010 Hb_007040_010 Hb_000752_080 Hb_000752_080 Hb_007040_010--Hb_000752_080 Hb_008758_010 Hb_008758_010 Hb_007040_010--Hb_008758_010 Hb_004010_020 Hb_004010_020 Hb_007040_010--Hb_004010_020 Hb_000059_120 Hb_000059_120 Hb_007040_010--Hb_000059_120 Hb_012184_030 Hb_012184_030 Hb_007040_010--Hb_012184_030 Hb_008206_070 Hb_008206_070 Hb_007040_010--Hb_008206_070 Hb_017604_030 Hb_017604_030 Hb_000752_080--Hb_017604_030 Hb_000752_080--Hb_012184_030 Hb_185839_010 Hb_185839_010 Hb_000752_080--Hb_185839_010 Hb_000752_080--Hb_004010_020 Hb_000752_080--Hb_008758_010 Hb_008758_010--Hb_004010_020 Hb_012404_010 Hb_012404_010 Hb_008758_010--Hb_012404_010 Hb_031691_010 Hb_031691_010 Hb_008758_010--Hb_031691_010 Hb_027890_010 Hb_027890_010 Hb_008758_010--Hb_027890_010 Hb_061940_010 Hb_061940_010 Hb_004010_020--Hb_061940_010 Hb_186440_010 Hb_186440_010 Hb_004010_020--Hb_186440_010 Hb_097889_010 Hb_097889_010 Hb_004010_020--Hb_097889_010 Hb_000059_120--Hb_008206_070 Hb_153636_010 Hb_153636_010 Hb_000059_120--Hb_153636_010 Hb_003228_090 Hb_003228_090 Hb_000059_120--Hb_003228_090 Hb_008643_050 Hb_008643_050 Hb_000059_120--Hb_008643_050 Hb_001390_080 Hb_001390_080 Hb_000059_120--Hb_001390_080 Hb_004241_030 Hb_004241_030 Hb_012184_030--Hb_004241_030 Hb_000085_030 Hb_000085_030 Hb_012184_030--Hb_000085_030 Hb_012184_030--Hb_017604_030 Hb_004687_010 Hb_004687_010 Hb_012184_030--Hb_004687_010 Hb_027380_240 Hb_027380_240 Hb_008206_070--Hb_027380_240 Hb_008206_070--Hb_001390_080 Hb_000628_010 Hb_000628_010 Hb_008206_070--Hb_000628_010 Hb_008206_070--Hb_008643_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14606 0 0 0 0.138627 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.4299

CAGE analysis