Hb_007044_010

Information

Type -
Description -
Location Contig7044: 477-1008
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_010 0.0 - - -
2 Hb_011639_010 0.1215033229 - - -
3 Hb_008616_030 0.1461026265 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
4 Hb_002311_230 0.170145015 - - -
5 Hb_004631_160 0.1743214979 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
6 Hb_001522_010 0.1818559922 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
7 Hb_031073_010 0.1833555611 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
8 Hb_119886_040 0.1833684465 - - -
9 Hb_000483_180 0.1846370634 - - -
10 Hb_001534_070 0.1904701905 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
11 Hb_030627_040 0.1914389486 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
12 Hb_000001_160 0.1932399193 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
13 Hb_006745_020 0.1950332684 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
14 Hb_000853_290 0.1955109654 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]
15 Hb_006816_120 0.1986071198 - - Nicotianamine synthase, putative [Ricinus communis]
16 Hb_008556_020 0.1993666613 - - -
17 Hb_002918_310 0.200340936 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
18 Hb_000212_130 0.2006969357 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003043_060 0.2014386131 - - -
20 Hb_000040_050 0.2023770564 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_007044_010 Hb_007044_010 Hb_011639_010 Hb_011639_010 Hb_007044_010--Hb_011639_010 Hb_008616_030 Hb_008616_030 Hb_007044_010--Hb_008616_030 Hb_002311_230 Hb_002311_230 Hb_007044_010--Hb_002311_230 Hb_004631_160 Hb_004631_160 Hb_007044_010--Hb_004631_160 Hb_001522_010 Hb_001522_010 Hb_007044_010--Hb_001522_010 Hb_031073_010 Hb_031073_010 Hb_007044_010--Hb_031073_010 Hb_011639_010--Hb_008616_030 Hb_011639_010--Hb_004631_160 Hb_011798_040 Hb_011798_040 Hb_011639_010--Hb_011798_040 Hb_011639_010--Hb_001522_010 Hb_000483_180 Hb_000483_180 Hb_011639_010--Hb_000483_180 Hb_008616_030--Hb_004631_160 Hb_012395_080 Hb_012395_080 Hb_008616_030--Hb_012395_080 Hb_007223_010 Hb_007223_010 Hb_008616_030--Hb_007223_010 Hb_119886_040 Hb_119886_040 Hb_008616_030--Hb_119886_040 Hb_005962_010 Hb_005962_010 Hb_002311_230--Hb_005962_010 Hb_002311_230--Hb_000483_180 Hb_002311_230--Hb_119886_040 Hb_008556_020 Hb_008556_020 Hb_002311_230--Hb_008556_020 Hb_002311_230--Hb_011639_010 Hb_003398_010 Hb_003398_010 Hb_004631_160--Hb_003398_010 Hb_000617_040 Hb_000617_040 Hb_004631_160--Hb_000617_040 Hb_000205_070 Hb_000205_070 Hb_004631_160--Hb_000205_070 Hb_002188_090 Hb_002188_090 Hb_001522_010--Hb_002188_090 Hb_006829_090 Hb_006829_090 Hb_001522_010--Hb_006829_090 Hb_078477_040 Hb_078477_040 Hb_001522_010--Hb_078477_040 Hb_005462_020 Hb_005462_020 Hb_001522_010--Hb_005462_020 Hb_001009_290 Hb_001009_290 Hb_001522_010--Hb_001009_290 Hb_000313_340 Hb_000313_340 Hb_001522_010--Hb_000313_340 Hb_000161_100 Hb_000161_100 Hb_031073_010--Hb_000161_100 Hb_000544_120 Hb_000544_120 Hb_031073_010--Hb_000544_120 Hb_005228_120 Hb_005228_120 Hb_031073_010--Hb_005228_120 Hb_002897_040 Hb_002897_040 Hb_031073_010--Hb_002897_040 Hb_008406_130 Hb_008406_130 Hb_031073_010--Hb_008406_130 Hb_004712_110 Hb_004712_110 Hb_031073_010--Hb_004712_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4602 12.4654 2.049 2.32091 34.9601 15.0648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.612523 1.44339 0.511325 3.1001 4.77124

CAGE analysis