Hb_007044_070

Information

Type -
Description -
Location Contig7044: 34033-35892
Sequence    

Annotation

kegg
ID rcu:RCOM_0279290
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_012088148.1
description PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID A0A067JXU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25660 PE=3 SV=1
Gene Ontology
ID GO:0003854
description cinnamoyl- reductase 2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55008: 32553-33247 , PASA_asmbl_55009: 34116-35414
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_070 0.0 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas]
2 Hb_000631_130 0.0812131107 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
3 Hb_025469_040 0.0902672967 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
4 Hb_131864_020 0.0967688846 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
5 Hb_001473_100 0.1120246979 - - chalcone synthase 1 [Jatropha curcas]
6 Hb_001936_030 0.1200493885 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
7 Hb_142522_030 0.1290196752 - - hypothetical protein JCGZ_21596 [Jatropha curcas]
8 Hb_000038_090 0.130327103 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
9 Hb_000625_130 0.1312115722 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
10 Hb_005000_040 0.1314495049 - - ACC oxidase ACCO2 [Manihot esculenta]
11 Hb_000069_050 0.1316458973 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
12 Hb_001168_010 0.1329055796 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
13 Hb_156144_040 0.1394051439 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_000917_330 0.1429702406 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
15 Hb_000933_200 0.14370301 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
16 Hb_000563_610 0.1446042749 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
17 Hb_148914_010 0.1469003899 - - glutathione s-transferase, putative [Ricinus communis]
18 Hb_000245_140 0.1491809294 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
19 Hb_001268_330 0.1528951757 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_034585_020 0.1545272008 - - -

Gene co-expression network

sample Hb_007044_070 Hb_007044_070 Hb_000631_130 Hb_000631_130 Hb_007044_070--Hb_000631_130 Hb_025469_040 Hb_025469_040 Hb_007044_070--Hb_025469_040 Hb_131864_020 Hb_131864_020 Hb_007044_070--Hb_131864_020 Hb_001473_100 Hb_001473_100 Hb_007044_070--Hb_001473_100 Hb_001936_030 Hb_001936_030 Hb_007044_070--Hb_001936_030 Hb_142522_030 Hb_142522_030 Hb_007044_070--Hb_142522_030 Hb_000038_090 Hb_000038_090 Hb_000631_130--Hb_000038_090 Hb_000631_130--Hb_001473_100 Hb_000631_130--Hb_025469_040 Hb_000933_200 Hb_000933_200 Hb_000631_130--Hb_000933_200 Hb_000631_130--Hb_131864_020 Hb_025469_040--Hb_131864_020 Hb_025469_040--Hb_001473_100 Hb_000625_130 Hb_000625_130 Hb_025469_040--Hb_000625_130 Hb_148914_010 Hb_148914_010 Hb_025469_040--Hb_148914_010 Hb_131864_020--Hb_001473_100 Hb_000815_280 Hb_000815_280 Hb_131864_020--Hb_000815_280 Hb_000589_100 Hb_000589_100 Hb_131864_020--Hb_000589_100 Hb_004055_080 Hb_004055_080 Hb_001473_100--Hb_004055_080 Hb_001473_100--Hb_000038_090 Hb_000917_330 Hb_000917_330 Hb_001936_030--Hb_000917_330 Hb_001936_030--Hb_000625_130 Hb_002248_020 Hb_002248_020 Hb_001936_030--Hb_002248_020 Hb_001936_030--Hb_025469_040 Hb_004774_060 Hb_004774_060 Hb_001936_030--Hb_004774_060 Hb_142522_030--Hb_000625_130 Hb_001101_020 Hb_001101_020 Hb_142522_030--Hb_001101_020 Hb_001377_480 Hb_001377_480 Hb_142522_030--Hb_001377_480 Hb_142522_030--Hb_000917_330 Hb_142522_030--Hb_131864_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.403633 3.7594 11.7179 5.12193 0.148467 0.0726594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.344553 0.596322 0.203005 72.2332 0.451953

CAGE analysis