Hb_007044_080

Information

Type -
Description -
Location Contig7044: 37084-46030
Sequence    

Annotation

kegg
ID rcu:RCOM_0279400
description hypothetical protein
nr
ID XP_012088151.1
description PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWI0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25661 PE=4 SV=1
Gene Ontology
ID GO:0005783
description transmembrane protein 33 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55010: 37162-46024 , PASA_asmbl_55011: 45113-45519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_080 0.0 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
2 Hb_000933_090 0.0580450162 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
3 Hb_004117_130 0.0673815506 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
4 Hb_000429_200 0.0800471455 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
5 Hb_000023_220 0.0820542614 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
6 Hb_028390_010 0.082240618 - - PREDICTED: filament-like plant protein 3 [Populus euphratica]
7 Hb_001199_020 0.0823268943 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
8 Hb_028487_110 0.0826346258 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
9 Hb_000051_070 0.0829768225 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
10 Hb_002149_020 0.0869499345 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
11 Hb_007218_080 0.0872905051 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
12 Hb_005977_090 0.0873773925 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
13 Hb_004724_200 0.0893393326 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
14 Hb_003090_080 0.0896998851 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
15 Hb_007594_130 0.0902723526 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
16 Hb_009467_060 0.0905914407 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
17 Hb_003656_130 0.0919021722 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
18 Hb_020719_030 0.0919294521 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
19 Hb_001866_110 0.0921748647 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
20 Hb_000803_300 0.0926979892 - - nuclear movement protein nudc, putative [Ricinus communis]

Gene co-expression network

sample Hb_007044_080 Hb_007044_080 Hb_000933_090 Hb_000933_090 Hb_007044_080--Hb_000933_090 Hb_004117_130 Hb_004117_130 Hb_007044_080--Hb_004117_130 Hb_000429_200 Hb_000429_200 Hb_007044_080--Hb_000429_200 Hb_000023_220 Hb_000023_220 Hb_007044_080--Hb_000023_220 Hb_028390_010 Hb_028390_010 Hb_007044_080--Hb_028390_010 Hb_001199_020 Hb_001199_020 Hb_007044_080--Hb_001199_020 Hb_000933_090--Hb_004117_130 Hb_004837_190 Hb_004837_190 Hb_000933_090--Hb_004837_190 Hb_000051_070 Hb_000051_070 Hb_000933_090--Hb_000051_070 Hb_001369_420 Hb_001369_420 Hb_000933_090--Hb_001369_420 Hb_000358_150 Hb_000358_150 Hb_000933_090--Hb_000358_150 Hb_002716_130 Hb_002716_130 Hb_004117_130--Hb_002716_130 Hb_020719_030 Hb_020719_030 Hb_004117_130--Hb_020719_030 Hb_000260_170 Hb_000260_170 Hb_004117_130--Hb_000260_170 Hb_004117_130--Hb_000023_220 Hb_000522_090 Hb_000522_090 Hb_000429_200--Hb_000522_090 Hb_000358_250 Hb_000358_250 Hb_000429_200--Hb_000358_250 Hb_000116_180 Hb_000116_180 Hb_000429_200--Hb_000116_180 Hb_000803_300 Hb_000803_300 Hb_000429_200--Hb_000803_300 Hb_000179_020 Hb_000179_020 Hb_000429_200--Hb_000179_020 Hb_000085_160 Hb_000085_160 Hb_000023_220--Hb_000085_160 Hb_000193_190 Hb_000193_190 Hb_000023_220--Hb_000193_190 Hb_000205_100 Hb_000205_100 Hb_000023_220--Hb_000205_100 Hb_000011_200 Hb_000011_200 Hb_000023_220--Hb_000011_200 Hb_106371_010 Hb_106371_010 Hb_000023_220--Hb_106371_010 Hb_000982_160 Hb_000982_160 Hb_028390_010--Hb_000982_160 Hb_002527_030 Hb_002527_030 Hb_028390_010--Hb_002527_030 Hb_001689_020 Hb_001689_020 Hb_028390_010--Hb_001689_020 Hb_028390_010--Hb_000933_090 Hb_000645_050 Hb_000645_050 Hb_028390_010--Hb_000645_050 Hb_000058_100 Hb_000058_100 Hb_001199_020--Hb_000058_100 Hb_001006_140 Hb_001006_140 Hb_001199_020--Hb_001006_140 Hb_004724_200 Hb_004724_200 Hb_001199_020--Hb_004724_200 Hb_007441_120 Hb_007441_120 Hb_001199_020--Hb_007441_120 Hb_006922_100 Hb_006922_100 Hb_001199_020--Hb_006922_100 Hb_004055_030 Hb_004055_030 Hb_001199_020--Hb_004055_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
92.5484 38.6356 25.7986 57.1886 130.376 109.433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.545 59.9698 58.2965 53.276 50.1786

CAGE analysis